Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- golgi 3
- plastid 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0012g00910.t01 | Wine grape | cytosol, extracellular | 94.31 | 94.52 |
| GSMUA_Achr4P28880_001 | Banana | cytosol | 94.31 | 94.52 |
| Solyc08g006960.2.1 | Tomato | cytosol, extracellular | 93.85 | 94.06 |
| KRH28283 | Soybean | cytosol, golgi | 93.62 | 93.84 |
| EES07425 | Sorghum | cytosol, extracellular | 93.39 | 93.61 |
| Os02t0690700-01 | Rice | plasma membrane | 93.17 | 93.38 |
| TraesCS6D01G251100.1 | Wheat | extracellular | 92.71 | 92.92 |
| TraesCS6A01G263800.1 | Wheat | extracellular | 92.71 | 92.92 |
| KRH77207 | Soybean | cytosol, extracellular | 92.71 | 92.92 |
| KRH58201 | Soybean | mitochondrion | 92.71 | 92.92 |
| TraesCS6B01G290800.1 | Wheat | golgi | 92.48 | 92.69 |
| CDY63050 | Canola | cytosol | 92.48 | 92.69 |
| Bra017537.1-P | Field mustard | cytosol | 92.26 | 92.47 |
| CDY35171 | Canola | cytosol | 92.26 | 92.47 |
| CDY03204 | Canola | cytosol | 92.26 | 92.47 |
| Bra025009.1-P | Field mustard | cytosol | 92.26 | 92.47 |
| KRH04335 | Soybean | endoplasmic reticulum | 92.03 | 92.24 |
| CDX87692 | Canola | cytosol | 92.03 | 92.24 |
| Bra022052.1-P | Field mustard | cytosol | 91.8 | 92.01 |
| CDX77680 | Canola | cytosol | 91.34 | 91.55 |
| CDY67244 | Canola | cytosol | 54.9 | 90.94 |
| AT5G46630.2 | Thale cress | cytosol | 87.93 | 87.53 |
| HORVU6Hr1G066890.2 | Barley | mitochondrion | 91.8 | 85.38 |
| Zm00001d017675_P003 | Maize | cytosol, endoplasmic reticulum | 89.07 | 74.9 |
| GSMUA_Achr2P12100_001 | Banana | cytosol | 94.99 | 70.08 |
| Solyc05g013340.2.1 | Tomato | plastid | 38.95 | 40.14 |
| Solyc06g071650.1.1 | Tomato | cytosol, plastid | 37.13 | 39.18 |
| Solyc04g026380.2.1 | Tomato | cytosol | 20.96 | 39.15 |
| Solyc04g026360.2.1 | Tomato | nucleus | 18.91 | 36.56 |
| Solyc04g076230.2.1 | Tomato | cytosol | 28.7 | 27.88 |
| Solyc01g100820.2.1 | Tomato | cytosol | 21.64 | 22.89 |
Protein Annotations
| Gene3D:2.60.40.1170 | MapMan:22.1.3.3 | Gene3D:3.30.450.60 | InterPro:AP2_Mu_C_sf | InterPro:Clathrin_mu | InterPro:Clathrin_mu_CS |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030131 | InterPro:IPR028565 |
| UniProt:K4C6U5 | InterPro:Longin-like_dom_sf | InterPro:MHD | PFAM:PF00928 | PIRSF:PIRSF005992 | PRINTS:PR00314 |
| ScanProsite:PS00990 | PFscan:PS51072 | PANTHER:PTHR10529 | PANTHER:PTHR10529:SF278 | SUPFAM:SSF49447 | SUPFAM:SSF64356 |
| EnsemblPlantsGene:Solyc06g061150.2 | EnsemblPlants:Solyc06g061150.2.1 | UniParc:UPI000276657D | : | : | : |
Description
No Description!
Coordinates
chr6:+:39146709..39159378
Molecular Weight (calculated)
49442.5 Da
IEP (calculated)
9.692
GRAVY (calculated)
-0.036
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVAASAVYF LNLRGDVLIN RLYRDDVGGN MVDAFRMHIM QTKELGTCPV RQIGGCSFFY MRISNVYIVI VVSTNANVAC AFKFVVEAVA LFKSYFGGSF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKQ PLDKPVPNAT LQVTGAVGWR REGLVYKKNE VFLDIVESVN LLMSSKGSVL
201: RCDVTGKVLM KCFLSGMPDL KLGLNDKIGL EKESQLKSRP TKSGKTIELD DVTFHQCVNL TRFNSEKTVS FVPPDGEFEL MKYRITEGVN LPFRVLPTIK
301: ELGRTRMEVN VKVKSVFGAK MFALGVVIKV PVPKQTAKAS FQVTSGRAKY NPSIDSLVWK IKKFPGQTES TMSAEVELIS TIAEKKSWTR PPIQMEFQVP
401: MFTASGLRVR FLKVWEKSGY NTVEWVRYIT KAGSYEIRC
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKQ PLDKPVPNAT LQVTGAVGWR REGLVYKKNE VFLDIVESVN LLMSSKGSVL
201: RCDVTGKVLM KCFLSGMPDL KLGLNDKIGL EKESQLKSRP TKSGKTIELD DVTFHQCVNL TRFNSEKTVS FVPPDGEFEL MKYRITEGVN LPFRVLPTIK
301: ELGRTRMEVN VKVKSVFGAK MFALGVVIKV PVPKQTAKAS FQVTSGRAKY NPSIDSLVWK IKKFPGQTES TMSAEVELIS TIAEKKSWTR PPIQMEFQVP
401: MFTASGLRVR FLKVWEKSGY NTVEWVRYIT KAGSYEIRC
001: MPVAASAIYF LNLRGDVLIN RTYRDDVGGN MVDAFRTHIM QTKELGNCPV RQIGGCSFVY MRISNVYIVI VVSSNANVAC GFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP KDKPVPNATL QVTGAVGWRR EGLAYKKNEV FLDIVESVNL LMSSKGNVLR
201: CDVTGKVLMK CFLSGMPDLK LGLNDKIGLE KESEMKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF QVTTGRAKYN PSIDCLVWKI RKFPGQTEST LSAEIELIST MGEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSYEIRC
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP KDKPVPNATL QVTGAVGWRR EGLAYKKNEV FLDIVESVNL LMSSKGNVLR
201: CDVTGKVLMK CFLSGMPDLK LGLNDKIGLE KESEMKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF QVTTGRAKYN PSIDCLVWKI RKFPGQTEST LSAEIELIST MGEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSYEIRC
Arabidopsis Description
Clathrin adaptor complexes medium subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4KHJ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.