Factsheet for Solyc06g071650.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069426	Potato	cytosol	31.49	98.5
Zm00001d052338_P001	Maize	cytosol	12.26	86.44
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	83.17	80.84
GSMUA_Achr7P17600_001	Banana	cytosol	83.17	80.84
Solyc05g013340.2.1	Tomato	plastid	82.69	80.75
Os01t0703600-01	Rice	plasma membrane	83.17	80.65
Solyc04g026380.2.1	Tomato	cytosol	45.43	80.43
Zm00001d011676_P001	Maize	extracellular, plasma membrane	82.93	80.42
EES01338	Sorghum	cytosol	82.69	80.19
Zm00001d043726_P001	Maize	cytosol	82.69	80.19
HORVU3Hr1G066020.1	Barley	cytosol	82.45	79.95
TraesCS3B01G286200.2	Wheat	cytosol	82.45	79.95
TraesCS3A01G254200.2	Wheat	cytosol	82.45	79.95
TraesCS3D01G255100.2	Wheat	cytosol	82.21	79.72
GSMUA_Achr1P25430_001	Banana	cytosol, extracellular	81.97	79.67
Os05t0543100-01	Rice	plasma membrane	82.21	79.53
TraesCS1A01G365600.1	Wheat	golgi	80.05	77.62
TraesCS1B01G383200.1	Wheat	cytosol	80.05	77.62
HORVU1Hr1G079050.3	Barley	cytosol	80.05	77.62
TraesCS1D01G371000.1	Wheat	cytosol	78.85	71.93
Solyc04g026360.2.1	Tomato	nucleus	37.02	67.84
Zm00001d036168_P001	Maize	mitochondrion	36.06	61.73
GSMUA_Achr8P31910_001	Banana	cytosol	16.59	42.86
Solyc06g061150.2.1	Tomato	nucleus	39.18	37.13
Solyc08g006960.2.1	Tomato	cytosol, extracellular	38.94	36.99
Solyc04g076230.2.1	Tomato	cytosol	31.01	28.54
Solyc01g100820.2.1	Tomato	cytosol	24.52	24.58

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.2.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:AP_mu_sigma_su	InterPro:Clathrin_mu
InterPro:Clathrin_mu_CS	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131
InterPro:IPR028565	UniProt:K4C8N7	InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PFAM:PF01217
PIRSF:PIRSF005992	PRINTS:PR00314	ScanProsite:PS00990	ScanProsite:PS00991	PFscan:PS51072	PANTHER:PTHR10529
PANTHER:PTHR10529:SF338	SUPFAM:SSF49447	SUPFAM:SSF64356	EnsemblPlantsGene:Solyc06g071650.1	EnsemblPlants:Solyc06g071650.1.1	UniParc:UPI00027672C9

Description

No Description!

Coordinates

chr6:-:44125307..44127739

Molecular Weight (calculated)

48133.8 Da

IEP (calculated)

6.685

GRAVY (calculated)

-0.381

Length

416 amino acids

Sequence
(BLAST)

001: MKGRCLISRD YRGDVSAQQV EKFFTKHLEK EDDLESDGPI CHENGVNYMF IQHKNIYLMA ASKQNSNAAS LLFFLHRVVD VFKHYFEELE EESLRDNFVV
101: VYELLDEMMD FGYPQYTEAK ILSEFIKTDA YRMEVNQHPP MAVTNAVSWR SEGVYHKNNE VYLDVVEHVN LLVNSNGQLI RSEVNGALKM RAYLSGMPEC
201: KLGLNDKVLL EAQGRPTKGK SIDLDDIKFH QCVRLARFEN DRTISFIPPD GSFDLMTYRL STQVKPLIWV EAQVERHSRS RVEMSVKARS QFKERSTATN
301: VEIELPVPSD AMSPIIRTSM GYATYAPERD AVVWKIKSFP GNKDYMLRAE FRLPSVISED TPPDRKAPIR VKFEIPYFTV SGIQVRYLKI IEKSGYQALP
401: WVRYITMAGE YELRLI

Best Arabidopsis Sequence Match ( AT1G60780.1 )
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFTKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV

Arabidopsis Description

AP1M2AP-1 complex subunit mu-2 [Source:UniProtKB/Swiss-Prot;Acc:O22715]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.