Factsheet for HORVU3Hr1G066020.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G079050.3
HORVU3Hr1G066020.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60780.1	HORVU1Hr1G079050.3	AT1G60780.1	23543752
AT1G60780.1	HORVU3Hr1G066020.1	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G255100.2	Wheat	cytosol	98.83	98.83
TraesCS3A01G254200.2	Wheat	cytosol	98.6	98.6
TraesCS3B01G286200.2	Wheat	cytosol	98.37	98.37
Os01t0703600-01	Rice	plasma membrane	96.5	96.5
Zm00001d043726_P001	Maize	cytosol	96.27	96.27
EES01338	Sorghum	cytosol	96.27	96.27
Zm00001d011676_P001	Maize	extracellular, plasma membrane	96.04	96.04
HORVU1Hr1G079050.3	Barley	cytosol	93.24	93.24
VIT_00s0225g00220.t01	Wine grape	cytosol	92.54	92.76
GSMUA_Achr7P17600_001	Banana	cytosol	92.31	92.52
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	91.38	91.59
Solyc05g013340.2.1	Tomato	plastid	89.74	90.38
GSMUA_Achr1P25430_001	Banana	cytosol, extracellular	89.98	90.19
KRH45615	Soybean	cytosol	88.34	88.55
KRG99414	Soybean	cytosol	88.34	88.55
CDY19316	Canola	cytosol	88.11	88.32
CDX97909	Canola	cytosol	88.11	88.32
AT1G60780.1	Thale cress	cytosol	87.88	88.08
Bra019904.1-P	Field mustard	cytosol	87.88	88.08
Bra031752.1-P	Field mustard	cytosol	86.95	87.97
CDY54239	Canola	cytosol	87.65	87.85
KRH69617	Soybean	cytosol	87.65	87.85
KRH74545	Soybean	endoplasmic reticulum	87.65	87.85
CDY61312	Canola	cytosol	87.65	87.85
PGSC0003DMT400002906	Potato	mitochondrion	44.99	87.73
Bra031481.1-P	Field mustard	cytosol	86.48	86.68
CDY46183	Canola	cytosol	86.25	86.45
CDY63681	Canola	cytosol	86.25	86.45
Solyc04g026360.2.1	Tomato	nucleus	44.99	85.02
PGSC0003DMT400069426	Potato	cytosol	26.34	84.96
CDY63680	Canola	cytosol	85.55	84.76
AT1G10730.1	Thale cress	cytosol	83.45	83.64
Solyc04g026380.2.1	Tomato	cytosol	45.45	82.98
Solyc06g071650.1.1	Tomato	cytosol, plastid	79.95	82.45
Zm00001d036168_P001	Maize	mitochondrion	39.63	69.96
HORVU6Hr1G066890.2	Barley	mitochondrion	38.0	34.53
HORVU2Hr1G030220.1	Barley	cytosol, mitochondrion, peroxisome, plastid	34.03	28.74
HORVU1Hr1G057140.1	Barley	cytosol	24.48	25.18
HORVU1Hr1G014710.1	Barley	endoplasmic reticulum, plasma membrane	1.86	22.22
HORVU6Hr1G043980.1	Barley	endoplasmic reticulum, plasma membrane	1.86	22.22
HORVU2Hr1G030200.1	Barley	endoplasmic reticulum, plasma membrane	1.86	22.22

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.2.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:AP_mu_sigma_su	InterPro:Clathrin_mu
InterPro:Clathrin_mu_CS	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131
EnsemblPlantsGene:HORVU3Hr1G066020	EnsemblPlants:HORVU3Hr1G066020.1	InterPro:IPR028565	InterPro:Longin-like_dom_sf	UniProt:M0VW23	InterPro:MHD
PFAM:PF00928	PFAM:PF01217	PIRSF:PIRSF005992	PRINTS:PR00314	ScanProsite:PS00990	ScanProsite:PS00991
PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF338	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI000296E046

Description

No Description!

Coordinates

chrchr3H:-:503111842..503117103

Molecular Weight (calculated)

49061.2 Da

IEP (calculated)

6.398

GRAVY (calculated)

-0.174

Length

429 amino acids

Sequence
(BLAST)

001: MAGAVSALFL LDIKGRVLVW RDFRGDVTAI QAERFFTKLL DKEGDAEAYS PVVYDDAGVT YMFIQHNNVF LLTASRQNCN AASILLFLHR VVDVFKHYFE
101: ELEEESLRDN FVVVYELLDE MMDFGYPQYT EAKILSEFIK TDAYKMEVTQ RPPMAVTNAV SWRSEGIRYK KNEVFLDVVE SVNILVNSNG QIVRSDVVGA
201: LKMRTYLSGM PECKLGLNDK VLLEAQGRAT KGKAIDLDDI KFHQCVRLAR FENDRTISFI PPDGSFDLMT YRLNTQVKPL IWVEAQVEKH SRSRIEFMIK
301: ARSQFKERST ATNVEIEVPV PSDATNPNIR TSMGSAAYAP ERDAMVWKIK SFPGGKEYMC RAEFSLPSIT AEEAVPEKKA PIRVKFEIPY FTVSGIQVRY
401: LKIIEKSGYQ ALPWVRYITM AGEYELRLI

Best Arabidopsis Sequence Match ( AT1G60780.1 )
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFTKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV

Arabidopsis Description

AP1M2AP-1 complex subunit mu-2 [Source:UniProtKB/Swiss-Prot;Acc:O22715]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.