Factsheet for PGSC0003DMT400002906

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002906

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60780.1	PGSC0003DMT400002906	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g026380.2.1	Tomato	cytosol	97.73	91.49
Zm00001d052338_P001	Maize	cytosol	22.27	83.05
PGSC0003DMT400069426	Potato	cytosol	50.0	82.71
Zm00001d036168_P001	Maize	mitochondrion	67.27	60.91
Bra031481.1-P	Field mustard	cytosol	90.91	46.73
VIT_00s0225g00220.t01	Wine grape	cytosol	90.91	46.73
CDY61312	Canola	cytosol	90.91	46.73
CDY63681	Canola	cytosol	90.91	46.73
KRH45615	Soybean	cytosol	90.45	46.5
KRH69617	Soybean	cytosol	90.45	46.5
KRG99414	Soybean	cytosol	90.45	46.5
CDY54239	Canola	cytosol	90.45	46.5
CDY46183	Canola	cytosol	90.45	46.5
CDX97909	Canola	cytosol	90.45	46.5
AT1G60780.1	Thale cress	cytosol	90.0	46.26
Bra019904.1-P	Field mustard	cytosol	90.0	46.26
KRH74545	Soybean	endoplasmic reticulum	90.0	46.26
CDY19316	Canola	cytosol	90.0	46.26
Bra031752.1-P	Field mustard	cytosol	89.09	46.23
GSMUA_Achr7P17600_001	Banana	cytosol	89.09	45.79
GSMUA_Achr1P25430_001	Banana	cytosol, extracellular	88.64	45.56
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	88.18	45.33
CDY63680	Canola	cytosol	89.09	45.27
HORVU3Hr1G066020.1	Barley	cytosol	87.73	44.99
Zm00001d011676_P001	Maize	extracellular, plasma membrane	87.73	44.99
EES01338	Sorghum	cytosol	87.27	44.76
Zm00001d043726_P001	Maize	cytosol	87.27	44.76
Os01t0703600-01	Rice	plasma membrane	87.27	44.76
TraesCS3A01G254200.2	Wheat	cytosol	86.82	44.52
TraesCS3B01G286200.2	Wheat	cytosol	86.82	44.52
TraesCS3D01G255100.2	Wheat	cytosol	86.82	44.52
TraesCS1A01G365600.1	Wheat	golgi	86.36	44.29
TraesCS1B01G383200.1	Wheat	cytosol	86.36	44.29
HORVU1Hr1G079050.3	Barley	cytosol	86.36	44.29
Os05t0543100-01	Rice	plasma membrane	85.91	43.95
AT1G10730.1	Thale cress	cytosol	84.09	43.22
TraesCS1D01G371000.1	Wheat	cytosol	84.09	40.57
GSMUA_Achr8P31910_001	Banana	cytosol	29.09	39.75
PGSC0003DMT400052825	Potato	cytosol, extracellular	38.64	19.41
PGSC0003DMT400024188	Potato	cytosol	30.45	14.82
PGSC0003DMT400007122	Potato	cytosol	20.45	11.22

Protein Annotations

Gene3D:2.60.40.1170	MapMan:35.1	InterPro:AP2_Mu_C_sf	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565	UniProt:M0ZKV6
InterPro:MHD	PFAM:PF00928	EnsemblPlantsGene:PGSC0003DMG400001136	PGSC:PGSC0003DMG400001136	EnsemblPlants:PGSC0003DMT400002906	PRINTS:PR00314
ScanProsite:PS00991	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF338	SUPFAM:SSF49447	UniParc:UPI000296B751

Description

Clathrin coat assembly protein ap-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400001136]

Coordinates

chr4:-:41061734..41064731

Molecular Weight (calculated)

25155.5 Da

IEP (calculated)

9.474

GRAVY (calculated)

-0.354

Length

220 amino acids

Sequence
(BLAST)

001: MPECKLGLND RVLLEAQGRN AKGKAIDLDD IKFHQCVRLA RFENDRTISF IPPDGAFEVM TYRLSTQVKP LVWVEAQVER HSKSRVEILV KARSQFKERS
101: TATNVEIELP VPTDATNPDV RTSMGSSTYA PEKDALIWKI KSFPGGKEYM LRAEFKLPSI TAEEAVPERK APIRVKFEIP YFTVSGIQVR YLKIIEKSGY
201: QALPWVRYIT MAGEYELRLT

Best Arabidopsis Sequence Match ( AT1G60780.1 )
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFTKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV

Arabidopsis Description

AP1M2AP-1 complex subunit mu-2 [Source:UniProtKB/Swiss-Prot;Acc:O22715]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.