Factsheet for TraesCS3D01G255100.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G365600.1
TraesCS1B01G383200.1
TraesCS1D01G371000.1
TraesCS3A01G254200.2
TraesCS3B01G286200.2
TraesCS3D01G255100.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60780.1	TraesCS1A01G365600.1	AT1G60780.1	23543752
AT1G60780.1	TraesCS1B01G383200.1	AT1G60780.1	23543752
AT1G60780.1	TraesCS1D01G371000.1	AT1G60780.1	23543752
AT1G60780.1	TraesCS3A01G254200.2	AT1G60780.1	23543752
AT1G60780.1	TraesCS3B01G286200.2	AT1G60780.1	23543752
AT1G60780.1	TraesCS3D01G255100.2	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G254200.2	Wheat	cytosol	99.77	99.77
TraesCS3B01G286200.2	Wheat	cytosol	99.53	99.53
HORVU3Hr1G066020.1	Barley	cytosol	98.83	98.83
Os01t0703600-01	Rice	plasma membrane	96.97	96.97
Zm00001d043726_P001	Maize	cytosol	96.27	96.27
EES01338	Sorghum	cytosol	96.27	96.27
Zm00001d011676_P001	Maize	extracellular, plasma membrane	95.57	95.57
VIT_00s0225g00220.t01	Wine grape	cytosol	92.54	92.76
GSMUA_Achr7P17600_001	Banana	cytosol	91.84	92.06
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	90.91	91.12
GSMUA_Achr1P25430_001	Banana	cytosol, extracellular	89.74	89.95
Solyc05g013340.2.1	Tomato	plastid	89.28	89.91
KRH45615	Soybean	cytosol	88.11	88.32
KRG99414	Soybean	cytosol	88.11	88.32
CDY19316	Canola	cytosol	87.41	87.62
CDX97909	Canola	cytosol	87.41	87.62
AT1G60780.1	Thale cress	cytosol	87.18	87.38
Bra019904.1-P	Field mustard	cytosol	87.18	87.38
Bra031752.1-P	Field mustard	cytosol	86.25	87.26
KRH69617	Soybean	cytosol	86.95	87.15
KRH74545	Soybean	endoplasmic reticulum	86.95	87.15
CDY61312	Canola	cytosol	86.95	87.15
CDY54239	Canola	cytosol	86.95	87.15
PGSC0003DMT400002906	Potato	mitochondrion	44.52	86.82
Bra031481.1-P	Field mustard	cytosol	85.78	85.98
TraesCS1D01G371000.1	Wheat	cytosol	91.38	85.96
CDY63681	Canola	cytosol	85.55	85.75
CDY46183	Canola	cytosol	85.55	85.75
Solyc04g026360.2.1	Tomato	nucleus	44.99	85.02
PGSC0003DMT400069426	Potato	cytosol	26.11	84.21
CDY63680	Canola	cytosol	84.85	84.06
AT1G10730.1	Thale cress	cytosol	82.98	83.18
Solyc04g026380.2.1	Tomato	cytosol	45.45	82.98
Solyc06g071650.1.1	Tomato	cytosol, plastid	79.72	82.21
Zm00001d036168_P001	Maize	mitochondrion	39.39	69.55
TraesCS6D01G251100.1	Wheat	extracellular	38.46	37.67
TraesCS2D01G172100.1	Wheat	peroxisome	32.4	30.82
TraesCS1D01G240100.2	Wheat	cytosol	24.71	25.42
TraesCS2D01G171900.1	Wheat	endoplasmic reticulum, plasma membrane	1.86	22.22

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.2.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:AP_mu_sigma_su	InterPro:Clathrin_mu
InterPro:Clathrin_mu_CS	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565
InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PFAM:PF01217	PIRSF:PIRSF005992	PRINTS:PR00314
ScanProsite:PS00990	ScanProsite:PS00991	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF338	SUPFAM:SSF49447
SUPFAM:SSF64356	EnsemblPlantsGene:TraesCS3D01G255100	EnsemblPlants:TraesCS3D01G255100.2	TIGR:cd09250	:	:

Description

No Description!

Coordinates

chr3D:-:356824391..356827838

Molecular Weight (calculated)

48971.1 Da

IEP (calculated)

6.398

GRAVY (calculated)

-0.173

Length

429 amino acids

Sequence
(BLAST)

001: MAGAVSALFL LDIKGRVLVW RDFRGDVTAV QAERFFTKLL DKEGDAEAYS PVVYDDAGVT YMFIQHNNVF LLTASRQNCN AASILLFLHR VVDVFKHYFE
101: ELEEESLRDN FVVVYELLDE MMDFGYPQYT EAKILSEFIK TDAYKMEVSQ RPPMAVTNAV SWRSEGIRYK KNEVFLDVVE SVNILVNSNG QIVRSDVVGA
201: LKMRTYLSGM PECKLGLNDK VLLEAQGRAT KGKAIDLDDI KFHQCVRLAR FENDRTISFI PPDGSFDLMT YRLNTQVKPL IWVEAQVEKH SRSRIELMIK
301: ARSQFKERST ATNVEIEVPV PSDATNPNIR TSMGSAAYAP ERDAMVWKVK SFPGGKEYMC RAEFSLPSIS AEEAVPEKKA PIRVKFEIPY FTVSGIQVRY
401: LKIIEKSGYQ ALPWVRYITM AGEYELRLI

Best Arabidopsis Sequence Match ( AT1G60780.1 )
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFTKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV

Arabidopsis Description

AP1M2AP-1 complex subunit mu-2 [Source:UniProtKB/Swiss-Prot;Acc:O22715]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.