CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 4
plastid 1
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01338

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60780.1	EES01338	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043726_P001	Maize	cytosol	100.0	100.0
Zm00001d011676_P001	Maize	extracellular, plasma membrane	99.3	99.3
Os01t0703600-01	Rice	plasma membrane	98.83	98.83
HORVU3Hr1G066020.1	Barley	cytosol	96.27	96.27
TraesCS3D01G255100.2	Wheat	cytosol	96.27	96.27
TraesCS3A01G254200.2	Wheat	cytosol	96.04	96.04
TraesCS3B01G286200.2	Wheat	cytosol	95.8	95.8
GSMUA_Achr7P17600_001	Banana	cytosol	93.94	94.16
VIT_00s0225g00220.t01	Wine grape	cytosol	93.71	93.93
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	92.54	92.76
GSMUA_Achr1P25430_001	Banana	cytosol, extracellular	90.91	91.12
Solyc05g013340.2.1	Tomato	plastid	89.51	90.14
CDY19316	Canola	cytosol	88.81	89.02
CDX97909	Canola	cytosol	88.81	89.02
AT1G60780.1	Thale cress	cytosol	88.58	88.78
Bra019904.1-P	Field mustard	cytosol	88.58	88.78
KRH45615	Soybean	cytosol	88.58	88.78
KRG99414	Soybean	cytosol	88.58	88.78
Bra031752.1-P	Field mustard	cytosol	87.65	88.68
CDY54239	Canola	cytosol	88.34	88.55
KRH69617	Soybean	cytosol	88.34	88.55
KRH74545	Soybean	endoplasmic reticulum	88.34	88.55
CDY61312	Canola	cytosol	88.34	88.55
Bra031481.1-P	Field mustard	cytosol	87.65	87.85
CDY46183	Canola	cytosol	87.41	87.62
CDY63681	Canola	cytosol	87.41	87.62
PGSC0003DMT400002906	Potato	mitochondrion	44.76	87.27
CDY63680	Canola	cytosol	86.71	85.91
Solyc04g026360.2.1	Tomato	nucleus	44.99	85.02
PGSC0003DMT400069426	Potato	cytosol	26.34	84.96
AT1G10730.1	Thale cress	cytosol	84.15	84.35
Solyc06g071650.1.1	Tomato	cytosol, plastid	80.19	82.69
Solyc04g026380.2.1	Tomato	cytosol	45.22	82.55
Zm00001d036168_P001	Maize	mitochondrion	40.79	72.02
EES07425	Sorghum	cytosol, extracellular	38.93	38.13
EER97557	Sorghum	cytosol, peroxisome, plastid	34.27	32.67
EES06180	Sorghum	cytosol	24.71	25.42

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.2.3	Gene3D:3.30.450.60	EntrezGene:8059151	InterPro:AP2_Mu_C_sf	InterPro:AP_mu_sigma_su
UniProt:C5XHL2	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	EnsemblPlants:EES01338	ProteinID:EES01338	ProteinID:EES01338.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565
InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PFAM:PF01217	PIRSF:PIRSF005992	PRINTS:PR00314
ScanProsite:PS00990	ScanProsite:PS00991	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF338	EnsemblPlantsGene:SORBI_3003G270600
SUPFAM:SSF49447	SUPFAM:SSF64356	unigene:Sbi.1122	UniParc:UPI000195CB97	RefSeq:XP_002456218.1	:

Description

hypothetical protein

Coordinates

chr3:+:60727143..60735273

Molecular Weight (calculated)

49004.1 Da

IEP (calculated)

6.536

GRAVY (calculated)

-0.190

Length

429 amino acids

Sequence
(BLAST)

001: MAGAVSALFL LDIKGRVLVW RDYRGDVSAL QAERFFTKLL DKEGDSEVHS PVVYDDAGVT YMFIQHNNVF LLTAARQNCN AASILLFLHR VVDVFKHYFE
101: ELEEESLRDN FVVVYELLDE MMDFGYPQYT EAKILSEFIK TDAYRMEVTQ RPPMAVTNAV SWRSEGIRYK KNEVFLDVVE SVNILVNSNG QIVRSDVVGA
201: LKMRTYLSGM PECKLGLNDR VLLEAQGRAT KGKAIDLDDI KFHQCVRLAR FENDRTISFI PPDGSFDLMT YRLSTQVKPL IWVEAQIEKH SRSRIELMVK
301: ARSQFKERST ATNVEIEVPV PSDATNPNIR TSMGSAAYAP ERDAMVWKVK SFPGGKEYMC RAEFSLPSIT AEEGAPEKKA PIRVKFEIPY FTVSGIQVRY
401: LKIIEKSGYQ ALPWVRYITM AGEYELRLI

Best Arabidopsis Sequence Match ( AT1G60780.1 )
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFTKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV

Arabidopsis Description

AP1M2AP-1 complex subunit mu-2 [Source:UniProtKB/Swiss-Prot;Acc:O22715]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.