CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

plastid 2
peroxisome 2
plasma membrane 1
nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0620300-01	Rice	plasma membrane	95.56	95.34
TraesCS2B01G191200.1	Wheat	golgi	94.67	94.46
TraesCS2D01G172100.1	Wheat	peroxisome	91.11	90.91
HORVU2Hr1G030220.1	Barley	cytosol, mitochondrion, peroxisome, plastid	94.44	83.66
Solyc04g076230.2.1	Tomato	cytosol	82.89	82.52
KRH72454	Soybean	cytosol	72.67	81.14
AT4G24550.2	Thale cress	cytosol	80.89	80.71
GSMUA_Achr10P...	Banana	cytosol	71.33	80.25
PGSC0003DMT400024188	Potato	cytosol	80.44	80.09
KRH16840	Soybean	cytosol	80.0	79.65
Bra010489.1-P	Field mustard	cytosol	79.78	79.25
Bra013813.1-P	Field mustard	cytosol	78.44	79.15
GSMUA_Achr6P10200_001	Banana	cytosol	73.11	78.52
KRH61131	Soybean	cytosol, nucleus	77.11	78.33
CDY34290	Canola	cytosol	78.0	77.48
CDY03442	Canola	cytosol	77.56	77.04
CDX92642	Canola	cytosol	79.33	76.94
KRH51806	Soybean	cytosol	65.56	76.62
CDY08937	Canola	cytosol	77.11	76.1
CDY24840	Canola	cytosol	78.0	75.81
Bra019220.1-P	Field mustard	cytosol	74.44	72.51
VIT_18s0001g13000.t01	Wine grape	cytosol	78.89	71.43
CDY11020	Canola	cytosol	34.0	70.51
EES01338	Sorghum	cytosol	32.67	34.27
EES07425	Sorghum	cytosol, extracellular	28.22	29.0
EES06180	Sorghum	cytosol	24.44	26.38
Zm00001d002925_P002	Maize	plastid	80.44	25.78

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.5.2.2.3	Gene3D:3.30.450.60	EntrezGene:8079208	InterPro:AP2_Mu_C_sf	InterPro:AP_mu_sigma_su
UniProt:C5X2G3	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	EnsemblPlants:EER97557	ProteinID:EER97557	ProteinID:EER97557.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005802
GO:GO:0005829	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030124	GO:GO:0030131	InterPro:IPR028565	InterPro:Longin-like_dom_sf	InterPro:MHD
PFAM:PF00928	PFAM:PF01217	PIRSF:PIRSF005992	PRINTS:PR00314	ScanProsite:PS00991	PFscan:PS51072
PANTHER:PTHR10529	PANTHER:PTHR10529:SF270	EnsemblPlantsGene:SORBI_3002G378200	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI0001A8393B
RefSeq:XP_002461036.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:73472614..73477302

Molecular Weight (calculated)

50514.5 Da

IEP (calculated)

6.540

GRAVY (calculated)

-0.189

Length

450 amino acids

Sequence
(BLAST)

001: MISQFFVLSQ RGDHIVFRDY RGEVPKGSAE IFFRKVKFWN DDEAEEAPPV FNVDGVNYIH VKVAGLFFVV TTMVNVSPSL LLELLQRIAR VTKDYLGVLN
101: EDSLRKNFIL VYELLDEVID FGYPQTTSTE VLKSYIFNEP IMVDAGRLPP LGPAAMFMQG TKRMPGTAVT KSVVATEPGG KKREEIFVDI IERISVTFSS
201: SGYILTSEID GTIQMKSYLT GNPEIRLALN EDLSIGRTGS SYDYRSSSGG GTVILDDCNF HESVHLDSFD IDRTLTLIPP DGEFPVMNYR MTQEFKPPFR
301: VTALIEEAGP SRAEVLLKIR ADFSANATAN TITVQMPVPS YTMRASFELE AGAVGQTTDF KEGSRRLEWN LKKIVGGSEH TLRAKLTFSQ ESHGNITKEA
401: GPVNMNFTIP MYNASKLQVR YLQIAKKSKA YNPYRWVRYV TQANSYVARL

Best Arabidopsis Sequence Match ( AT4G24550.2 )
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I

Arabidopsis Description

AP4MAP4M [Source:UniProtKB/TrEMBL;Acc:A0A178UX13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.