Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013813.1-P | Field mustard | cytosol | 95.57 | 96.64 |
| Bra010489.1-P | Field mustard | cytosol | 95.79 | 95.36 |
| CDY34290 | Canola | cytosol | 94.46 | 94.04 |
| CDY03442 | Canola | cytosol | 93.79 | 93.38 |
| CDX92642 | Canola | cytosol | 94.46 | 91.81 |
| CDY08937 | Canola | cytosol | 92.68 | 91.67 |
| CDY24840 | Canola | cytosol | 92.46 | 90.06 |
| Solyc04g076230.2.1 | Tomato | cytosol | 84.48 | 84.29 |
| Bra019220.1-P | Field mustard | cytosol | 86.25 | 84.2 |
| CDY11020 | Canola | cytosol | 40.35 | 83.87 |
| KRH16840 | Soybean | cytosol | 81.15 | 80.97 |
| KRH72454 | Soybean | cytosol | 72.28 | 80.89 |
| EER97557 | Sorghum | cytosol, peroxisome, plastid | 80.71 | 80.89 |
| TraesCS2B01G191200.1 | Wheat | golgi | 80.49 | 80.49 |
| KRH61131 | Soybean | cytosol, nucleus | 78.71 | 80.14 |
| PGSC0003DMT400024188 | Potato | cytosol | 80.04 | 79.87 |
| Os07t0620300-01 | Rice | plasma membrane | 78.71 | 78.71 |
| KRH51806 | Soybean | cytosol | 66.96 | 78.44 |
| TraesCS2D01G172100.1 | Wheat | peroxisome | 77.38 | 77.38 |
| GSMUA_Achr10P... | Banana | cytosol | 66.3 | 74.75 |
| GSMUA_Achr6P10200_001 | Banana | cytosol | 68.74 | 73.99 |
| VIT_18s0001g13000.t01 | Wine grape | cytosol | 79.16 | 71.83 |
| HORVU2Hr1G030220.1 | Barley | cytosol, mitochondrion, peroxisome, plastid | 80.49 | 71.46 |
| AT1G60780.1 | Thale cress | cytosol | 30.82 | 32.48 |
| AT1G10730.1 | Thale cress | cytosol | 30.82 | 32.48 |
| AT5G46630.2 | Thale cress | cytosol | 27.49 | 28.12 |
| AT1G56590.1 | Thale cress | cytosol | 24.39 | 26.51 |
| Zm00001d002925_P002 | Maize | plastid | 67.41 | 21.65 |
Protein Annotations
| Gene3D:2.60.40.1170 | MapMan:22.5.2.2.3 | Gene3D:3.30.450.60 | EntrezGene:828557 | UniProt:A0A178UX13 | ProteinID:AEE84924.1 |
| InterPro:AP2_Mu_C_sf | InterPro:AP_mu_sigma_su | ArrayExpress:AT4G24550 | EnsemblPlantsGene:AT4G24550 | RefSeq:AT4G24550 | TAIR:AT4G24550 |
| RefSeq:AT4G24550-TAIR-G | EnsemblPlants:AT4G24550.2 | TAIR:AT4G24550.2 | EMBL:AY072171 | Unigene:At.32335 | ProteinID:CAA23008.1 |
| ProteinID:CAB79365.1 | InterPro:Clathrin_mu | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0005802 | GO:GO:0005829 | GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030124 | GO:GO:0030131 |
| InterPro:IPR028565 | InterPro:Longin-like_dom_sf | InterPro:MHD | RefSeq:NP_194186.1 | ProteinID:OAO97937.1 | PFAM:PF00928 |
| PFAM:PF01217 | PIRSF:PIRSF005992 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00314 | PFscan:PS51072 | PANTHER:PTHR10529 | PANTHER:PTHR10529:SF270 |
| UniProt:Q9SB50 | SUPFAM:SSF49447 | SUPFAM:SSF64356 | UniParc:UPI00000A75C5 | : | : |
Description
AP4MAP4M [Source:UniProtKB/TrEMBL;Acc:A0A178UX13]
Coordinates
chr4:+:12675708..12679203
Molecular Weight (calculated)
50949.0 Da
IEP (calculated)
8.292
GRAVY (calculated)
-0.204
Length
451 amino acids
Sequence
(BLAST)
(BLAST)
001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.