Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G24550.2 | Thale cress | cytosol | 91.81 | 94.46 |
| CDY34290 | Canola | cytosol | 89.01 | 91.17 |
| CDY03442 | Canola | cytosol | 88.79 | 90.95 |
| CDY08937 | Canola | cytosol | 89.01 | 90.57 |
| CDY24840 | Canola | cytosol | 89.01 | 89.2 |
| Bra019220.1-P | Field mustard | cytosol | 84.91 | 85.28 |
| CDY11020 | Canola | cytosol | 39.87 | 85.25 |
| Solyc04g076230.2.1 | Tomato | cytosol | 80.17 | 82.3 |
| KRH16840 | Soybean | cytosol | 77.59 | 79.65 |
| EER97557 | Sorghum | cytosol, peroxisome, plastid | 76.94 | 79.33 |
| KRH72454 | Soybean | cytosol | 68.75 | 79.16 |
| TraesCS2B01G191200.1 | Wheat | golgi | 76.51 | 78.71 |
| KRH61131 | Soybean | cytosol, nucleus | 74.78 | 78.33 |
| PGSC0003DMT400024188 | Potato | cytosol | 76.29 | 78.32 |
| Os07t0620300-01 | Rice | plasma membrane | 74.57 | 76.72 |
| KRH51806 | Soybean | cytosol | 63.36 | 76.36 |
| TraesCS2D01G172100.1 | Wheat | peroxisome | 73.49 | 75.61 |
| GSMUA_Achr10P... | Banana | cytosol | 62.93 | 73.0 |
| GSMUA_Achr6P10200_001 | Banana | cytosol | 64.44 | 71.36 |
| VIT_18s0001g13000.t01 | Wine grape | cytosol | 75.65 | 70.62 |
| HORVU2Hr1G030220.1 | Barley | cytosol, mitochondrion, peroxisome, plastid | 76.51 | 69.88 |
| CDY54239 | Canola | cytosol | 28.88 | 31.31 |
| CDY61312 | Canola | cytosol | 28.88 | 31.31 |
| CDY19316 | Canola | cytosol | 28.88 | 31.31 |
| CDY63681 | Canola | cytosol | 28.88 | 31.31 |
| CDX97909 | Canola | cytosol | 28.88 | 31.31 |
| CDY46183 | Canola | cytosol | 28.66 | 31.07 |
| CDY63680 | Canola | cytosol | 28.23 | 30.25 |
| CDY67244 | Canola | cytosol | 16.16 | 28.3 |
| CDX87692 | Canola | cytosol | 26.29 | 27.85 |
| CDY63050 | Canola | cytosol | 26.08 | 27.63 |
| CDX77680 | Canola | cytosol | 26.08 | 27.63 |
| CDY35171 | Canola | cytosol | 25.86 | 27.4 |
| CDY03204 | Canola | cytosol | 25.86 | 27.4 |
| CDX95277 | Canola | cytosol | 22.63 | 24.14 |
| CDY41703 | Canola | cytosol | 22.63 | 23.28 |
| Zm00001d002925_P002 | Maize | plastid | 64.87 | 21.44 |
Protein Annotations
| Gene3D:2.60.40.1170 | MapMan:22.5.2.2.3 | Gene3D:3.30.450.60 | GO:A0A078DUQ5 | InterPro:AP2_Mu_C_sf | InterPro:AP_mu_sigma_su |
| EnsemblPlants:CDX92642 | ProteinID:CDX92642 | ProteinID:CDX92642.1 | InterPro:Clathrin_mu | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016192 | GO:GO:0030131 | EnsemblPlantsGene:GSBRNA2T00154450001 | InterPro:IPR028565 | InterPro:Longin-like_dom_sf | InterPro:MHD |
| PFAM:PF00928 | PFAM:PF01217 | PIRSF:PIRSF005992 | PRINTS:PR00314 | PFscan:PS51072 | PANTHER:PTHR10529 |
| PANTHER:PTHR10529:SF270 | SUPFAM:SSF49447 | SUPFAM:SSF64356 | UniParc:UPI0004EEE6A5 | : | : |
Description
BnaC07g39000D
Coordinates
chrLK031873:+:133933..136933
Molecular Weight (calculated)
52376.7 Da
IEP (calculated)
6.540
GRAVY (calculated)
-0.137
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MMISQLFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKFFL LVYELLDEVI DFGYVQTTST EVLKSYVFNE PILIAPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVLANDPG GRRREEIFVD IIEKISVTFS
201: SNGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG GGVSVYDYRS SSGSGVILDD CNFHESVQLD SFDTDRTLSL VPPDGEFPVM NYRMTQEFRP
301: PFHVNTLIEE AGRLKAEVII KIRADFPSDI IANTITVQMP LPNYTSRASF ELEHDAVGQK TDFKETSKML EWSLKKASLE FSSFTYIIVG GAEHTLRAKL
401: TFSQEFHGNI TKEAGPVSMT FTIPMYNVSK LQVKYLQIAK KSSSYNPYRW VRYVTQANSY VARI
101: NEDSFRKFFL LVYELLDEVI DFGYVQTTST EVLKSYVFNE PILIAPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVLANDPG GRRREEIFVD IIEKISVTFS
201: SNGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG GGVSVYDYRS SSGSGVILDD CNFHESVQLD SFDTDRTLSL VPPDGEFPVM NYRMTQEFRP
301: PFHVNTLIEE AGRLKAEVII KIRADFPSDI IANTITVQMP LPNYTSRASF ELEHDAVGQK TDFKETSKML EWSLKKASLE FSSFTYIIVG GAEHTLRAKL
401: TFSQEFHGNI TKEAGPVSMT FTIPMYNVSK LQVKYLQIAK KSSSYNPYRW VRYVTQANSY VARI
001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I
Arabidopsis Description
AP4MAP4M [Source:UniProtKB/TrEMBL;Acc:A0A178UX13]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.