CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87692	Canola	cytosol	98.86	98.86
CDY63050	Canola	cytosol	98.86	98.86
CDY03204	Canola	cytosol	98.63	98.63
CDY35171	Canola	cytosol	98.63	98.63
CDY67244	Canola	cytosol	59.36	98.11
VIT_02s0012g00910.t01	Wine grape	cytosol, extracellular	93.84	93.84
GSMUA_Achr4P28880_001	Banana	cytosol	93.84	93.84
AT5G46630.2	Thale cress	cytosol	94.29	93.65
Solyc08g006960.2.1	Tomato	cytosol, extracellular	93.61	93.61
KRH77207	Soybean	cytosol, extracellular	93.61	93.61
PGSC0003DMT400052825	Potato	cytosol, extracellular	93.38	93.38
EES07425	Sorghum	cytosol, extracellular	93.15	93.15
Os02t0690700-01	Rice	plasma membrane	93.15	93.15
KRH58201	Soybean	mitochondrion	92.92	92.92
KRH28283	Soybean	cytosol, golgi	92.92	92.92
KRH04335	Soybean	endoplasmic reticulum	92.69	92.69
TraesCS6A01G263800.1	Wheat	extracellular	92.01	92.01
TraesCS6D01G251100.1	Wheat	extracellular	92.01	92.01
TraesCS6B01G290800.1	Wheat	golgi	91.78	91.78
Solyc06g061150.2.1	Tomato	nucleus	91.55	91.34
HORVU6Hr1G066890.2	Barley	mitochondrion	91.1	84.53
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	88.81	74.52
GSMUA_Achr2P12100_001	Banana	cytosol	94.52	69.58
CDY19316	Canola	cytosol	39.5	40.42
CDY54239	Canola	cytosol	39.27	40.19
CDX97909	Canola	cytosol	39.27	40.19
CDY61312	Canola	cytosol	39.04	39.95
CDY63681	Canola	cytosol	38.36	39.25
CDY46183	Canola	cytosol	38.13	39.02
CDY63680	Canola	cytosol	37.9	38.34
CDY34290	Canola	cytosol	29.22	28.26
CDY11020	Canola	cytosol	13.93	28.11
CDY03442	Canola	cytosol	28.77	27.81
CDY24840	Canola	cytosol	28.77	27.21
CDX92642	Canola	cytosol	27.63	26.08
CDY08937	Canola	cytosol	26.48	25.44
CDX95277	Canola	cytosol	20.78	20.92
CDY41703	Canola	cytosol	21.0	20.4

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.3.3	Gene3D:3.30.450.60	GO:A0A078CLB0	InterPro:AP2_Mu_C_sf	EnsemblPlants:CDX77680
ProteinID:CDX77680	ProteinID:CDX77680.1	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	EnsemblPlantsGene:GSBRNA2T00128646001	InterPro:IPR028565	InterPro:Longin-like_dom_sf
InterPro:MHD	PFAM:PF00928	PIRSF:PIRSF005992	PRINTS:PR00314	ScanProsite:PS00990	PFscan:PS51072
PANTHER:PTHR10529	PANTHER:PTHR10529:SF278	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI0004EF0479	:

Description

BnaC07g19340D

Coordinates

chrLK031812:+:801610..804421

Molecular Weight (calculated)

49343.2 Da

IEP (calculated)

9.440

GRAVY (calculated)

-0.087

Length

438 amino acids

Sequence
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RTYRDDVGGN MVDAFRTHIM QTKELGNCPV RQIGGCSFVY MRISNVYIVI VASSNANVAC GFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP KDKPIPNATL QVTGAVGWRR EGLSYKKNEV FLDIVESVNL LMSSKGNVLR
201: CDVTGKVLMK CFLSGMPDLK LGLNDKIGLE KESEMKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTINE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF QVTTGRAKYN PSIDCLVWKI RKFPGQTEST LSAEIELIST MGEKKSWTRP PIQMEFQVPM
401: FTASGLRVWF LKVWEKSGYN TVEWVRYITK AGSYEIRC

Best Arabidopsis Sequence Match ( AT5G46630.1 )
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RTYRDDVGGN MVDAFRTHIM QTKELGNCPV RQIGGCSFVY MRISNVYIVI VVSSNANVAC GFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP KDKPVPNATL QVTGAVGWRR EGLAYKKNEV FLDIVESVNL LMSSKGNVLR
201: CDVTGKVLMK CFLSGMPDLK LGLNDKIGLE KESEMKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF QVTTGRAKYN PSIDCLVWKI RKFPGQTEST LSAEIELIST MGEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSYEIRC

Arabidopsis Description

Clathrin adaptor complexes medium subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4KHJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.