Factsheet for GSMUA_Achr4P28880_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0012g00910.t01	Wine grape	cytosol, extracellular	97.26	97.26
Os02t0690700-01	Rice	plasma membrane	96.8	96.8
EES07425	Sorghum	cytosol, extracellular	96.8	96.8
TraesCS6A01G263800.1	Wheat	extracellular	95.89	95.89
TraesCS6D01G251100.1	Wheat	extracellular	95.89	95.89
KRH77207	Soybean	cytosol, extracellular	95.89	95.89
Solyc08g006960.2.1	Tomato	cytosol, extracellular	95.66	95.66
TraesCS6B01G290800.1	Wheat	golgi	95.66	95.66
PGSC0003DMT400052825	Potato	cytosol, extracellular	95.43	95.43
KRH58201	Soybean	mitochondrion	94.98	94.98
Bra025009.1-P	Field mustard	cytosol	94.75	94.75
Bra017537.1-P	Field mustard	cytosol	94.75	94.75
CDY63050	Canola	cytosol	94.75	94.75
CDY35171	Canola	cytosol	94.75	94.75
CDY03204	Canola	cytosol	94.75	94.75
CDX87692	Canola	cytosol	94.52	94.52
KRH04335	Soybean	endoplasmic reticulum	94.52	94.52
Solyc06g061150.2.1	Tomato	nucleus	94.52	94.31
Bra022052.1-P	Field mustard	cytosol	94.29	94.29
CDX77680	Canola	cytosol	93.84	93.84
KRH28283	Soybean	cytosol, golgi	93.61	93.61
CDY67244	Canola	cytosol	56.39	93.21
AT5G46630.2	Thale cress	cytosol	90.41	89.8
HORVU6Hr1G066890.2	Barley	mitochondrion	94.98	88.14
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	92.47	77.59
GSMUA_Achr2P12100_001	Banana	cytosol	99.09	72.94
GSMUA_Achr1P25430_001	Banana	cytosol, extracellular	39.04	39.95
GSMUA_Achr7P17600_001	Banana	cytosol	38.81	39.72
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	38.81	39.72
GSMUA_Achr10P...	Banana	cytosol	26.48	29.0
GSMUA_Achr6P10200_001	Banana	cytosol	27.63	28.88
GSMUA_Achr8P31910_001	Banana	cytosol	9.36	25.47
GSMUA_Achr5P21080_001	Banana	cytosol	21.0	22.12

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.3.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	EnsemblPlantsGene:GSMUA_Achr4G28880_001
EnsemblPlants:GSMUA_Achr4P28880_001	EnsemblPlants:GSMUA_Achr4T28880_001	InterPro:IPR028565	InterPro:Longin-like_dom_sf	UniProt:M0ST00	InterPro:MHD
PFAM:PF00928	PIRSF:PIRSF005992	PRINTS:PR00314	ScanProsite:PS00990	PFscan:PS51072	PANTHER:PTHR10529
PANTHER:PTHR10529:SF278	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI00029642CD	:	:

Description

AP-2 complex subunit mu [Source:GMGC_GENE;Acc:GSMUA_Achr4G28880_001]

Coordinates

chr4:+:27102384..27111432

Molecular Weight (calculated)

49341.5 Da

IEP (calculated)

9.623

GRAVY (calculated)

-0.017

Length

438 amino acids

Sequence
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RLYRDDVGGN MVDAFRMHIM QTKELGTCPV RQIGGCSFLY MRISNVYIVI VVSKNANVAC AFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLAP EILKLYITQE GVRSPFSSKP SDKPVPNATL QVTGAVGWRR EGLLYKKNEV FLDIVESVNL LMSSKGSVLR
201: CDVTGKILMK CFLSGMPDLK LGLNDKIGLE NESQLKSRPI KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKVP VPKQTAKTSF QVTSGRAKYN ASIDCLVWKI RKFPGQTEST MSAEVELIST MAEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSYEIRC

Best Arabidopsis Sequence Match ( AT5G46630.1 )
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RTYRDDVGGN MVDAFRTHIM QTKELGNCPV RQIGGCSFVY MRISNVYIVI VVSSNANVAC GFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP KDKPVPNATL QVTGAVGWRR EGLAYKKNEV FLDIVESVNL LMSSKGNVLR
201: CDVTGKVLMK CFLSGMPDLK LGLNDKIGLE KESEMKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF QVTTGRAKYN PSIDCLVWKI RKFPGQTEST LSAEIELIST MGEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSYEIRC

Arabidopsis Description

Clathrin adaptor complexes medium subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4KHJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.