Factsheet for GSMUA_Achr8P31910_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P25430_001
GSMUA_Achr2P06510_001
GSMUA_Achr7P17600_001
GSMUA_Achr8P31910_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60780.1	GSMUA_Achr1P25430_001	AT1G60780.1	23543752
AT1G60780.1	GSMUA_Achr2P06510_001	AT1G60780.1	23543752
AT1G60780.1	GSMUA_Achr7P17600_001	AT1G60780.1	23543752
AT1G60780.1	GSMUA_Achr8P31910_001	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052338_P001	Maize	cytosol	22.36	61.02
PGSC0003DMT400069426	Potato	cytosol	36.65	44.36
PGSC0003DMT400002906	Potato	mitochondrion	39.75	29.09
Solyc04g026380.2.1	Tomato	cytosol	40.37	27.66
GSMUA_Achr7P17600_001	Banana	cytosol	50.31	18.93
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	50.31	18.93
VIT_00s0225g00220.t01	Wine grape	cytosol	50.31	18.93
GSMUA_Achr1P25430_001	Banana	cytosol, extracellular	47.2	17.76
Bra031752.1-P	Field mustard	cytosol	46.58	17.69
CDY46183	Canola	cytosol	46.58	17.52
CDY54239	Canola	cytosol	46.58	17.52
CDY61312	Canola	cytosol	46.58	17.52
CDY63681	Canola	cytosol	46.58	17.52
Bra031481.1-P	Field mustard	cytosol	46.58	17.52
Solyc05g013340.2.1	Tomato	plastid	45.96	17.37
CDY19316	Canola	cytosol	45.96	17.29
CDX97909	Canola	cytosol	45.96	17.29
Bra019904.1-P	Field mustard	cytosol	45.96	17.29
KRH69617	Soybean	cytosol	45.34	17.06
AT1G60780.1	Thale cress	cytosol	45.34	17.06
KRG99414	Soybean	cytosol	44.72	16.82
KRH45615	Soybean	cytosol	44.72	16.82
KRH74545	Soybean	endoplasmic reticulum	44.72	16.82
CDY63680	Canola	cytosol	44.72	16.63
Solyc06g071650.1.1	Tomato	cytosol, plastid	42.86	16.59
AT1G10730.1	Thale cress	cytosol	42.24	15.89
GSMUA_Achr4P28880_001	Banana	cytosol	25.47	9.36
GSMUA_Achr5P21080_001	Banana	cytosol	18.01	6.97
GSMUA_Achr2P12100_001	Banana	cytosol	25.47	6.89
Solyc04g026360.2.1	Tomato	nucleus	9.32	6.61
GSMUA_Achr6P10200_001	Banana	cytosol	9.94	3.82
GSMUA_Achr10P...	Banana	cytosol	8.7	3.5

Protein Annotations

EnsemblPlants:GSMUA_Achr8P31910_001	EnsemblPlants:GSMUA_Achr8T31910_001	EnsemblPlantsGene:GSMUA_Achr8G31910_001	Gene3D:2.60.40.1170	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	InterPro:AP2_Mu_C_sf	InterPro:IPR028565	InterPro:MHD
PANTHER:PTHR10529	PANTHER:PTHR10529:SF338	PFAM:PF00928	PFscan:PS51072	SEG:seg	SUPFAM:SSF49447
UniParc:UPI0002959963	UniProt:M0TVE3	MapMan:35.1	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G31910_001]

Coordinates

chr8:-:33434350..33436367

Molecular Weight (calculated)

17765.4 Da

IEP (calculated)

8.472

GRAVY (calculated)

-0.094

Length

161 amino acids

Sequence
(BLAST)

001: MSFGVLWHRF DENMNLFVCK ASDLGCSSQE ALKKSPTDHG KSEKSVLSFR KGAELPVTSE ATNPIIGSAA YAPENDALVW KIKSFPGGKV RDVTSLSGLI
101: GEMTAEAAAP EKKASPIRVK FEILYFTTSE MLVFCIIKSG YQAFPWVRHI TVAGDYERRL I

Best Arabidopsis Sequence Match ( AT1G60780.1 )
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFTKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV

Arabidopsis Description

AP1M2AP-1 complex subunit mu-2 [Source:UniProtKB/Swiss-Prot;Acc:O22715]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.