Factsheet for GSMUA_Achr1P25430_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P25430_001
GSMUA_Achr2P06510_001
GSMUA_Achr7P17600_001
GSMUA_Achr8P31910_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60780.1	GSMUA_Achr1P25430_001	AT1G60780.1	23543752
AT1G60780.1	GSMUA_Achr2P06510_001	AT1G60780.1	23543752
AT1G60780.1	GSMUA_Achr7P17600_001	AT1G60780.1	23543752
AT1G60780.1	GSMUA_Achr8P31910_001	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P17600_001	Banana	cytosol	94.63	94.63
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	92.76	92.76
VIT_00s0225g00220.t01	Wine grape	cytosol	91.36	91.36
Zm00001d043726_P001	Maize	cytosol	91.12	90.91
EES01338	Sorghum	cytosol	91.12	90.91
Zm00001d011676_P001	Maize	extracellular, plasma membrane	90.89	90.68
Os01t0703600-01	Rice	plasma membrane	90.89	90.68
HORVU3Hr1G066020.1	Barley	cytosol	90.19	89.98
TraesCS3D01G255100.2	Wheat	cytosol	89.95	89.74
TraesCS3B01G286200.2	Wheat	cytosol	89.72	89.51
TraesCS3A01G254200.2	Wheat	cytosol	89.72	89.51
KRH45615	Soybean	cytosol	89.49	89.49
KRG99414	Soybean	cytosol	89.49	89.49
Solyc05g013340.2.1	Tomato	plastid	88.32	88.73
PGSC0003DMT400002906	Potato	mitochondrion	45.56	88.64
Os05t0543100-01	Rice	plasma membrane	89.02	88.6
TraesCS1B01G383200.1	Wheat	cytosol	88.55	88.34
TraesCS1A01G365600.1	Wheat	golgi	88.55	88.34
HORVU1Hr1G079050.3	Barley	cytosol	88.55	88.34
KRH74545	Soybean	endoplasmic reticulum	88.32	88.32
KRH69617	Soybean	cytosol	88.32	88.32
AT1G60780.1	Thale cress	cytosol	86.68	86.68
CDX97909	Canola	cytosol	86.68	86.68
CDY19316	Canola	cytosol	86.68	86.68
Bra019904.1-P	Field mustard	cytosol	86.45	86.45
Bra031481.1-P	Field mustard	cytosol	86.45	86.45
Bra031752.1-P	Field mustard	cytosol	85.51	86.32
CDY54239	Canola	cytosol	86.22	86.22
CDY61312	Canola	cytosol	86.22	86.22
CDY63681	Canola	cytosol	86.22	86.22
CDY46183	Canola	cytosol	85.75	85.75
PGSC0003DMT400069426	Potato	cytosol	26.4	84.96
CDY63680	Canola	cytosol	85.51	84.53
Solyc04g026380.2.1	Tomato	cytosol	46.03	83.83
AT1G10730.1	Thale cress	cytosol	82.24	82.24
TraesCS1D01G371000.1	Wheat	cytosol	87.38	82.02
Solyc06g071650.1.1	Tomato	cytosol, plastid	79.67	81.97
Solyc04g026360.2.1	Tomato	nucleus	42.99	81.06
Zm00001d036168_P001	Maize	mitochondrion	37.62	66.26
GSMUA_Achr8P31910_001	Banana	cytosol	17.76	47.2
GSMUA_Achr4P28880_001	Banana	cytosol	39.95	39.04
GSMUA_Achr10P...	Banana	cytosol	28.74	30.75
GSMUA_Achr6P10200_001	Banana	cytosol	29.67	30.31
GSMUA_Achr2P12100_001	Banana	cytosol	39.95	28.74
GSMUA_Achr5P21080_001	Banana	cytosol	24.3	25.0

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.2.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:AP_mu_sigma_su	InterPro:Clathrin_mu
InterPro:Clathrin_mu_CS	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131
EnsemblPlantsGene:GSMUA_Achr1G25430_001	EnsemblPlants:GSMUA_Achr1P25430_001	EnsemblPlants:GSMUA_Achr1T25430_001	InterPro:IPR028565	InterPro:Longin-like_dom_sf	UniProt:M0S300
InterPro:MHD	PFAM:PF00928	PFAM:PF01217	PIRSF:PIRSF005992	PRINTS:PR00314	ScanProsite:PS00990
ScanProsite:PS00991	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF338	SUPFAM:SSF49447	SUPFAM:SSF64356
UniParc:UPI000295F4B6	:	:	:	:	:

Description

AP-1 complex subunit mu-1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G25430_001]

Coordinates

chr1:+:19776600..19781137

Molecular Weight (calculated)

49179.4 Da

IEP (calculated)

6.799

GRAVY (calculated)

-0.177

Length

428 amino acids

Sequence
(BLAST)

001: MAGAVSALFL LDIKGRILIW RDYRGDVSAV QAERFFTKLI EKEGDIESRS PVVFDDGISY MFIQHNNVFL MTAARQNCNV ASILLFLHRV VNVFKHYFEE
101: LEEESLRDNF VVVYELLDEI MDFGYPQYTE AKILSEFIKT DAYRMEVVQR PPMAVTNAVS WRSEGIWYKK NEVFLDVVES VNILVNSNGQ IIRSEVVGAL
201: KMRTYLSGMP ECKLGLNDRL LLETQGRTTK GKAIDLDDIK FHQCVRLSRF ENDRTISFIP PDGSFDLMTY RLSTQVKPPV WVEAQVEKHS RSRIEILVKA
301: RSQFKERSTA TNVEIELPVP SDAIHPNVRT SMGSAKYAPE NDALVWKIKS FPGGKEYMCR AEFSLPSITA EEATPEKKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLI

Best Arabidopsis Sequence Match ( AT1G60780.1 )
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFTKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV

Arabidopsis Description

AP1M2AP-1 complex subunit mu-2 [Source:UniProtKB/Swiss-Prot;Acc:O22715]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.