Factsheet for TraesCS1A01G365600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 5
plastid 1
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G365600.1
TraesCS1B01G383200.1
TraesCS1D01G371000.1
TraesCS3A01G254200.2
TraesCS3B01G286200.2
TraesCS3D01G255100.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60780.1	TraesCS1A01G365600.1	AT1G60780.1	23543752
AT1G60780.1	TraesCS1B01G383200.1	AT1G60780.1	23543752
AT1G60780.1	TraesCS1D01G371000.1	AT1G60780.1	23543752
AT1G60780.1	TraesCS3A01G254200.2	AT1G60780.1	23543752
AT1G60780.1	TraesCS3B01G286200.2	AT1G60780.1	23543752
AT1G60780.1	TraesCS3D01G255100.2	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G383200.1	Wheat	cytosol	100.0	100.0
HORVU1Hr1G079050.3	Barley	cytosol	100.0	100.0
Os05t0543100-01	Rice	plasma membrane	93.71	93.49
TraesCS1D01G371000.1	Wheat	cytosol	98.6	92.76
TraesCS3A01G254200.2	Wheat	cytosol	92.31	92.31
GSMUA_Achr7P17600_001	Banana	cytosol	90.68	90.89
VIT_00s0225g00220.t01	Wine grape	cytosol	89.51	89.72
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	89.51	89.72
GSMUA_Achr1P25430_001	Banana	cytosol, extracellular	88.34	88.55
Solyc05g013340.2.1	Tomato	plastid	87.41	88.03
KRH74545	Soybean	endoplasmic reticulum	87.41	87.62
KRH45615	Soybean	cytosol	87.18	87.38
KRG99414	Soybean	cytosol	87.18	87.38
CDY19316	Canola	cytosol	87.18	87.38
CDX97909	Canola	cytosol	87.18	87.38
KRH69617	Soybean	cytosol	86.95	87.15
Bra019904.1-P	Field mustard	cytosol	86.95	87.15
Bra031752.1-P	Field mustard	cytosol	85.55	86.56
CDY61312	Canola	cytosol	86.25	86.45
CDY54239	Canola	cytosol	86.25	86.45
PGSC0003DMT400002906	Potato	mitochondrion	44.29	86.36
AT1G60780.1	Thale cress	cytosol	86.01	86.22
Bra031481.1-P	Field mustard	cytosol	85.08	85.28
CDY63681	Canola	cytosol	84.85	85.05
CDY46183	Canola	cytosol	84.85	85.05
CDY63680	Canola	cytosol	83.92	83.14
PGSC0003DMT400069426	Potato	cytosol	25.64	82.71
Solyc04g026380.2.1	Tomato	cytosol	44.76	81.7
AT1G10730.1	Thale cress	cytosol	81.12	81.31
Solyc04g026360.2.1	Tomato	nucleus	42.89	81.06
Solyc06g071650.1.1	Tomato	cytosol, plastid	77.62	80.05
TraesCS6A01G263800.1	Wheat	extracellular	40.33	39.5
TraesCS1A01G240000.1	Wheat	cytosol	25.17	25.9
TraesCS2A01G165000.1	Wheat	endoplasmic reticulum, plasma membrane	2.1	25.0

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.2.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:AP_mu_sigma_su	InterPro:Clathrin_mu
InterPro:Clathrin_mu_CS	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565
InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PFAM:PF01217	PIRSF:PIRSF005992	PRINTS:PR00314
ScanProsite:PS00990	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF338	SUPFAM:SSF49447	SUPFAM:SSF64356
EnsemblPlantsGene:TraesCS1A01G365600	EnsemblPlants:TraesCS1A01G365600.1	TIGR:cd09250	:	:	:

Description

No Description!

Coordinates

chr1A:-:544585827..544588458

Molecular Weight (calculated)

48995.1 Da

IEP (calculated)

6.642

GRAVY (calculated)

-0.182

Length

429 amino acids

Sequence
(BLAST)

001: MAGAVSALFL LDIKGRVLVW RDYRGDVTAL QAERFFTKLL DKEGDAEVHS PVVHDGAGVS YTFIQHNNVF LLTAARQNCN AASILLFLHR LVDVFKHYFE
101: ELEEESLRDN FVVVYELLDE MMDFGYPQYT EATILSEFIK TDAYRMEVTQ RPPMAVTNAV SWRSEGIRYK KNEVFLDVVE SVNILVNSNG QIVRSDIIGA
201: LKMRTFLSGM PECKLGLNDR VLLEAQGRAT KGKAIDLDDI KFHQCVRLTR FENDRTISFV PPDGAFDLMT YRLTTQVKPL IWVEAQVEKH SRSRIEIMVK
301: ARSQFKERST GTNVEIEVPV PYDATNPNIR TSMGSAAYAP ERDAMVWKIK SFPGGKEYMC RAEFSLPSIT SEEATPEKKA PIRVKFEIPY FTVSGIQVRY
401: LKVIEKSGYQ ALPWVRYITM AGEYELRLI

Best Arabidopsis Sequence Match ( AT1G60780.1 )
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFTKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV

Arabidopsis Description

AP1M2AP-1 complex subunit mu-2 [Source:UniProtKB/Swiss-Prot;Acc:O22715]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.