Factsheet for Solyc04g026360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g026360.2.1
Solyc04g026380.2.1
Solyc05g013340.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60780.1	Solyc04g026360.2.1	AT1G60780.1	23543752
AT1G60780.1	Solyc04g026380.2.1	AT1G60780.1	23543752
AT1G60780.1	Solyc05g013340.2.1	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g013340.2.1	Tomato	plastid	88.11	46.95
VIT_00s0225g00220.t01	Wine grape	cytosol	86.78	46.03
Os01t0703600-01	Rice	plasma membrane	85.02	44.99
HORVU3Hr1G066020.1	Barley	cytosol	85.02	44.99
TraesCS3D01G255100.2	Wheat	cytosol	85.02	44.99
EES01338	Sorghum	cytosol	85.02	44.99
Zm00001d043726_P001	Maize	cytosol	85.02	44.99
AT1G60780.1	Thale cress	cytosol	84.58	44.86
TraesCS3A01G254200.2	Wheat	cytosol	84.58	44.76
TraesCS3B01G286200.2	Wheat	cytosol	84.58	44.76
Zm00001d011676_P001	Maize	extracellular, plasma membrane	84.14	44.52
CDY54239	Canola	cytosol	83.26	44.16
CDY19316	Canola	cytosol	83.26	44.16
KRH45615	Soybean	cytosol	83.26	44.16
GSMUA_Achr7P17600_001	Banana	cytosol	83.26	44.16
KRG99414	Soybean	cytosol	83.26	44.16
Bra031752.1-P	Field mustard	cytosol	82.38	44.1
CDY61312	Canola	cytosol	82.82	43.93
Bra031481.1-P	Field mustard	cytosol	82.82	43.93
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	82.82	43.93
CDX97909	Canola	cytosol	82.38	43.69
CDY63681	Canola	cytosol	82.38	43.69
KRH74545	Soybean	endoplasmic reticulum	82.38	43.69
Bra019904.1-P	Field mustard	cytosol	82.38	43.69
CDY46183	Canola	cytosol	82.38	43.69
KRH69617	Soybean	cytosol	81.94	43.46
CDY63680	Canola	cytosol	82.82	43.42
AT1G10730.1	Thale cress	cytosol	81.5	43.22
Os05t0543100-01	Rice	plasma membrane	81.5	43.02
GSMUA_Achr1P25430_001	Banana	cytosol, extracellular	81.06	42.99
TraesCS1A01G365600.1	Wheat	golgi	81.06	42.89
TraesCS1B01G383200.1	Wheat	cytosol	81.06	42.89
HORVU1Hr1G079050.3	Barley	cytosol	81.06	42.89
TraesCS1D01G371000.1	Wheat	cytosol	81.06	40.35
Solyc06g071650.1.1	Tomato	cytosol, plastid	67.84	37.02
Solyc08g006960.2.1	Tomato	cytosol, extracellular	36.56	18.95
Solyc06g061150.2.1	Tomato	nucleus	36.56	18.91
Solyc04g076230.2.1	Tomato	cytosol	33.48	16.81
Solyc01g100820.2.1	Tomato	cytosol	26.43	14.46
GSMUA_Achr8P31910_001	Banana	cytosol	6.61	9.32
Zm00001d052338_P001	Maize	cytosol	0.88	3.39
Solyc04g026380.2.1	Tomato	cytosol	3.08	2.98
Zm00001d036168_P001	Maize	mitochondrion	2.64	2.47

Protein Annotations

Gene3D:2.60.40.1170	Gene3D:3.30.450.60	MapMan:35.1	InterPro:AP2_Mu_C_sf	InterPro:AP_mu_sigma_su	InterPro:Clathrin_mu
InterPro:Clathrin_mu_CS	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131
InterPro:IPR028565	UniProt:K4BR76	InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PFAM:PF01217
PRINTS:PR00314	ScanProsite:PS00990	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF338	SUPFAM:SSF49447
SUPFAM:SSF64356	EnsemblPlantsGene:Solyc04g026360.2	EnsemblPlants:Solyc04g026360.2.1	UniParc:UPI0002765E42	:	:

Description

No Description!

Coordinates

chr4:-:16492556..16496356

Molecular Weight (calculated)

26409.6 Da

IEP (calculated)

4.855

GRAVY (calculated)

-0.134

Length

227 amino acids

Sequence
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDFRGDVSSV QAERFFTKLL EKEGDPQDPV AYDNGVTYMF IQHNNVYLMT ASRQNCNAAS ILLFLHRVVD VFKHYFEELE
101: EESLRDNFVV VYELLDEMMD FGYPQYTEAK ILSEFIKTDA YRMEVTQRPP MAVTNAVSWR SEGIQYKKNE VFLDVVESVN ILVNSNGQIV RSDVVGALKM
201: RTYLREMSVY DSLAWVGDKY LFHVYRW

Best Arabidopsis Sequence Match ( AT1G60780.1 )
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFTKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV

Arabidopsis Description

AP1M2AP-1 complex subunit mu-2 [Source:UniProtKB/Swiss-Prot;Acc:O22715]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.