Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- plastid 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400024188 | Potato | cytosol | 93.58 | 93.58 |
| AT4G24550.2 | Thale cress | cytosol | 84.29 | 84.48 |
| Bra013813.1-P | Field mustard | cytosol | 82.52 | 83.63 |
| KRH16840 | Soybean | cytosol | 83.41 | 83.41 |
| KRH72454 | Soybean | cytosol | 74.34 | 83.37 |
| KRH61131 | Soybean | cytosol, nucleus | 81.64 | 83.3 |
| TraesCS2B01G191200.1 | Wheat | golgi | 82.74 | 82.93 |
| EER97557 | Sorghum | cytosol, peroxisome, plastid | 82.52 | 82.89 |
| Bra010489.1-P | Field mustard | cytosol | 82.74 | 82.56 |
| KRH51806 | Soybean | cytosol | 69.25 | 81.3 |
| Os07t0620300-01 | Rice | plasma membrane | 80.75 | 80.93 |
| CDX92642 | Canola | cytosol | 82.3 | 80.17 |
| CDY34290 | Canola | cytosol | 80.31 | 80.13 |
| CDY08937 | Canola | cytosol | 80.31 | 79.61 |
| TraesCS2D01G172100.1 | Wheat | peroxisome | 79.42 | 79.6 |
| CDY03442 | Canola | cytosol | 79.65 | 79.47 |
| CDY24840 | Canola | cytosol | 79.42 | 77.54 |
| Bra019220.1-P | Field mustard | cytosol | 77.21 | 75.54 |
| GSMUA_Achr10P... | Banana | cytosol | 66.37 | 75.0 |
| GSMUA_Achr6P10200_001 | Banana | cytosol | 68.58 | 73.99 |
| VIT_18s0001g13000.t01 | Wine grape | cytosol | 80.75 | 73.44 |
| HORVU2Hr1G030220.1 | Barley | cytosol, mitochondrion, peroxisome, plastid | 82.52 | 73.43 |
| CDY11020 | Canola | cytosol | 34.96 | 72.81 |
| Solyc04g026360.2.1 | Tomato | nucleus | 16.81 | 33.48 |
| Solyc05g013340.2.1 | Tomato | plastid | 30.75 | 32.63 |
| Solyc06g071650.1.1 | Tomato | cytosol, plastid | 28.54 | 31.01 |
| Solyc04g026380.2.1 | Tomato | cytosol | 15.71 | 30.21 |
| Solyc06g061150.2.1 | Tomato | nucleus | 27.88 | 28.7 |
| Solyc08g006960.2.1 | Tomato | cytosol, extracellular | 26.77 | 27.63 |
| Solyc01g100820.2.1 | Tomato | cytosol | 25.0 | 27.23 |
| Zm00001d002925_P002 | Maize | plastid | 67.26 | 21.65 |
Protein Annotations
| Gene3D:2.60.40.1170 | MapMan:22.5.2.2.3 | Gene3D:3.30.450.60 | InterPro:AP2_Mu_C_sf | InterPro:AP_mu_sigma_su | InterPro:Clathrin_mu |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005802 |
| GO:GO:0005829 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0016192 | GO:GO:0030124 | GO:GO:0030131 | InterPro:IPR028565 | UniProt:K4BU61 | InterPro:Longin-like_dom_sf |
| InterPro:MHD | PFAM:PF00928 | PFAM:PF01217 | PIRSF:PIRSF005992 | PRINTS:PR00314 | PFscan:PS51072 |
| PANTHER:PTHR10529 | PANTHER:PTHR10529:SF270 | SUPFAM:SSF49447 | SUPFAM:SSF64356 | EnsemblPlantsGene:Solyc04g076230.2 | EnsemblPlants:Solyc04g076230.2.1 |
| UniParc:UPI0002765A75 | SEG:seg | : | : | : | : |
Description
AP-4 complex subunit mu [Source:Projected from Arabidopsis thaliana (AT4G24550) UniProtKB/Swiss-Prot;Acc:Q9SB50]
Coordinates
chr4:-:61170510..61177956
Molecular Weight (calculated)
50594.8 Da
IEP (calculated)
6.972
GRAVY (calculated)
-0.173
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MISQFFVLSQ RGDSIVFRDY RGDVPKGSAE IFFRKVKFWK EDGGEEAPPV FNVDGVNYFH VKVVGLLFVA TSRTNLSPSL VLELLQRIAR VIKDYLGVLN
101: EDSLRKNFVL VYELLDEVVD FGYVQTTSTE ILKSYIFNEP IMIDAGRLPP LGPAAMFMQG SKRMPGTAIT KSVVANEPGG RKREEIFVDI IEKISITFSS
201: SGYILTSEID GTIQMKSYLT GNPEIRLALN EDLGIGRAGG RSAYDYGGSA GSGAVVLDDC NFHESVQLDS FDVDRTLTLV PPDGEFPVMN YRITQEFKPP
301: FRINTLIEEA GSLKAEVILK IRAEFPSDIT ANTILVQMPL PTYTSRVSFE LEPGTVGQTT DFKESNKRLE WNLKKVVGGS DHTLRAKLTF SQESHGNITK
401: EAGPVSMTFT IPMYNPSRLQ VKYLQIAKKS KTYNPYRWVR YVTQANSYVA RI
101: EDSLRKNFVL VYELLDEVVD FGYVQTTSTE ILKSYIFNEP IMIDAGRLPP LGPAAMFMQG SKRMPGTAIT KSVVANEPGG RKREEIFVDI IEKISITFSS
201: SGYILTSEID GTIQMKSYLT GNPEIRLALN EDLGIGRAGG RSAYDYGGSA GSGAVVLDDC NFHESVQLDS FDVDRTLTLV PPDGEFPVMN YRITQEFKPP
301: FRINTLIEEA GSLKAEVILK IRAEFPSDIT ANTILVQMPL PTYTSRVSFE LEPGTVGQTT DFKESNKRLE WNLKKVVGGS DHTLRAKLTF SQESHGNITK
401: EAGPVSMTFT IPMYNPSRLQ VKYLQIAKKS KTYNPYRWVR YVTQANSYVA RI
001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I
Arabidopsis Description
AP4MAP4M [Source:UniProtKB/TrEMBL;Acc:A0A178UX13]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.