CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16840	Soybean	cytosol	96.77	86.28
Solyc04g076230.2.1	Tomato	cytosol	83.37	74.34
PGSC0003DMT400024188	Potato	cytosol	81.64	72.79
EER97557	Sorghum	cytosol, peroxisome, plastid	81.14	72.67
KRH61131	Soybean	cytosol, nucleus	79.65	72.46
AT4G24550.2	Thale cress	cytosol	80.89	72.28
Bra013813.1-P	Field mustard	cytosol	79.9	72.2
TraesCS2B01G191200.1	Wheat	golgi	80.65	72.06
Bra010489.1-P	Field mustard	cytosol	80.65	71.74
CDY34290	Canola	cytosol	80.15	71.3
Os07t0620300-01	Rice	plasma membrane	79.65	71.18
CDY03442	Canola	cytosol	79.4	70.64
KRH51806	Soybean	cytosol	67.25	70.39
CDY24840	Canola	cytosol	79.4	69.11
CDX92642	Canola	cytosol	79.16	68.75
TraesCS2D01G172100.1	Wheat	peroxisome	76.92	68.74
CDY08937	Canola	cytosol	77.67	68.64
GSMUA_Achr10P...	Banana	cytosol	65.76	66.25
Bra019220.1-P	Field mustard	cytosol	74.94	65.37
GSMUA_Achr6P10200_001	Banana	cytosol	67.49	64.92
VIT_18s0001g13000.t01	Wine grape	cytosol	79.9	64.79
HORVU2Hr1G030220.1	Barley	cytosol, mitochondrion, peroxisome, plastid	80.4	63.78
CDY11020	Canola	cytosol	31.27	58.06
KRG99414	Soybean	cytosol	30.52	28.74
KRH45615	Soybean	cytosol	30.52	28.74
KRH69617	Soybean	cytosol	30.52	28.74
KRH74545	Soybean	endoplasmic reticulum	30.27	28.5
KRH77207	Soybean	cytosol, extracellular	28.29	26.03
KRH04335	Soybean	endoplasmic reticulum	28.04	25.8
KRH58201	Soybean	mitochondrion	27.79	25.57
KRH28283	Soybean	cytosol, golgi	27.79	25.57
KRG96704	Soybean	cytosol	23.08	22.41
KRH33789	Soybean	cytosol	22.58	21.93
KRH68423	Soybean	cytosol	23.57	21.74
Zm00001d002925_P002	Maize	plastid	64.52	18.52

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.5.2.2.3	Gene3D:3.30.450.60	EMBL:ACUP02001212	InterPro:AP2_Mu_C_sf	InterPro:Clathrin_mu
EnsemblPlantsGene:GLYMA_02G213600	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131
InterPro:IPR028565	UniProt:K7K9X0	EnsemblPlants:KRH72454	ProteinID:KRH72454	ProteinID:KRH72454.1	InterPro:Longin-like_dom_sf
InterPro:MHD	PFAM:PF00928	PIRSF:PIRSF005992	PRINTS:PR00314	PFscan:PS51072	PANTHER:PTHR10529
PANTHER:PTHR10529:SF270	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI000294AE4E	:	:

Description

hypothetical protein

Coordinates

chr2:-:39973374..39981010

Molecular Weight (calculated)

44944.7 Da

IEP (calculated)

7.215

GRAVY (calculated)

-0.116

Length

403 amino acids

Sequence
(BLAST)

001: MISQFFVLSQ RGDNIVFRDY RGEVQKGSAE IFFRKVKFWE DGGLQEAPPV FNVDGVNYFH VKVVGLLFVA TTRVNTSPSF DYLGILNEDS LRKNFVLVYE
101: LLDEVIDFGY VQTTSTELLK SYVFNEPLVI DAARLPPLGP AAIFTQGTKR MPGIAVTKSV VATEPGGRKR EEIFVDIIEK ISITFSSSGY ILTSEIDGTI
201: QMKSYLSGNP EIRLALNDDL SIGRSQGSAF GYRSSSGSGT VILDDCNFHE SVRLDSFDID RTLSLAEVIL KVSAEFPSSV TANTIKVQMP LPKCTSRVSF
301: ELEPGAVGQT TDFKEANKRL EWSLRKIVGG SEHTLHAKLT FSQESHVNIT KESGPVSMTF TIPMHNVSRL QVKYLQIAKK SATHEPYRWV RYVTQANSYV
401: ARI

Best Arabidopsis Sequence Match ( AT4G24550.2 )
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I

Arabidopsis Description

AP4MAP4M [Source:UniProtKB/TrEMBL;Acc:A0A178UX13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.