CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34290	Canola	cytosol	94.6	96.69
CDY03442	Canola	cytosol	94.17	96.25
AT4G24550.2	Thale cress	cytosol	90.06	92.46
Bra013813.1-P	Field mustard	cytosol	88.98	92.38
CDY08937	Canola	cytosol	90.93	92.32
CDX92642	Canola	cytosol	89.2	89.01
CDY11020	Canola	cytosol	38.44	82.03
PGSC0003DMT400024188	Potato	cytosol	79.7	81.64
KRH61131	Soybean	cytosol, nucleus	76.46	79.91
KRH16840	Soybean	cytosol	77.97	79.87
Solyc04g076230.2.1	Tomato	cytosol	77.54	79.42
KRH72454	Soybean	cytosol	69.11	79.4
Os07t0620300-01	Rice	plasma membrane	77.32	79.38
TraesCS2B01G191200.1	Wheat	golgi	76.03	78.05
EER97557	Sorghum	cytosol, peroxisome, plastid	75.81	78.0
KRH51806	Soybean	cytosol	63.93	76.88
GSMUA_Achr10P...	Banana	cytosol	65.44	75.75
TraesCS2D01G172100.1	Wheat	peroxisome	73.0	74.94
GSMUA_Achr6P10200_001	Banana	cytosol	67.82	74.94
HORVU2Hr1G030220.1	Barley	cytosol, mitochondrion, peroxisome, plastid	76.03	69.29
VIT_18s0001g13000.t01	Wine grape	cytosol	74.08	69.01
CDY54239	Canola	cytosol	29.37	31.78
CDY61312	Canola	cytosol	29.37	31.78
CDY63681	Canola	cytosol	29.37	31.78
CDY46183	Canola	cytosol	29.16	31.54
CDX97909	Canola	cytosol	29.16	31.54
CDY19316	Canola	cytosol	29.16	31.54
CDY63680	Canola	cytosol	28.73	30.72
CDY67244	Canola	cytosol	17.49	30.57
CDX87692	Canola	cytosol	27.43	29.0
CDY63050	Canola	cytosol	27.21	28.77
CDX77680	Canola	cytosol	27.21	28.77
CDY35171	Canola	cytosol	27.0	28.54
CDY03204	Canola	cytosol	27.0	28.54
CDX95277	Canola	cytosol	23.33	24.83
CDY41703	Canola	cytosol	23.11	23.73
Zm00001d002925_P002	Maize	plastid	63.07	20.8

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.5.2.2.3	Gene3D:3.30.450.60	GO:A0A078GE85	UniProt:A0A078GE85	InterPro:AP2_Mu_C_sf
InterPro:AP_mu_sigma_su	EnsemblPlants:CDY24840	ProteinID:CDY24840	ProteinID:CDY24840.1	InterPro:Clathrin_mu	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	EnsemblPlantsGene:GSBRNA2T00027320001	InterPro:IPR028565
InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PFAM:PF01217	PIRSF:PIRSF005992	PRINTS:PR00314
PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF270	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI0004EE3359

Description

BnaA08g14700DBnaA08g14700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GE85]

Coordinates

chrLK032164:+:510142..513319

Molecular Weight (calculated)

51990.3 Da

IEP (calculated)

6.698

GRAVY (calculated)

-0.135

Length

463 amino acids

Sequence
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYVFNE PILIAPARLQ PIDPAAIFTQ GSKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG ASVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDVVA NTITIQMPLP NYTSRASFEL ELGAAGQKTD FKETSKMLEW SFKKASLESL SCMVASIVGG AEHTLRAKLT
401: FSQEFHGNIT KEAGPVSMTF TIPMYNVSKL QVKYLQIAKN SSSQNPYRWV RYVTQANSYV ARI

Best Arabidopsis Sequence Match ( AT4G24550.2 )
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I

Arabidopsis Description

AP4MAP4M [Source:UniProtKB/TrEMBL;Acc:A0A178UX13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.