CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2
plasma membrane 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51806	Soybean	cytosol	82.84	95.32
PGSC0003DMT400024188	Potato	cytosol	83.75	82.08
Solyc04g076230.2.1	Tomato	cytosol	83.3	81.64
KRH16840	Soybean	cytosol	81.94	80.31
KRH72454	Soybean	cytosol	72.46	79.65
CDY34290	Canola	cytosol	81.26	79.47
Bra013813.1-P	Field mustard	cytosol	79.68	79.15
CDY03442	Canola	cytosol	80.81	79.03
AT4G24550.2	Thale cress	cytosol	80.14	78.71
Bra010489.1-P	Field mustard	cytosol	79.23	77.48
Os07t0620300-01	Rice	plasma membrane	78.78	77.38
EER97557	Sorghum	cytosol, peroxisome, plastid	78.33	77.11
TraesCS2B01G191200.1	Wheat	golgi	77.88	76.5
CDY24840	Canola	cytosol	79.91	76.46
CDX92642	Canola	cytosol	78.33	74.78
CDY08937	Canola	cytosol	76.52	74.34
GSMUA_Achr10P...	Banana	cytosol	66.82	74.0
TraesCS2D01G172100.1	Wheat	peroxisome	74.94	73.61
VIT_18s0001g13000.t01	Wine grape	cytosol	81.94	73.04
GSMUA_Achr6P10200_001	Banana	cytosol	67.95	71.84
Bra019220.1-P	Field mustard	cytosol	74.72	71.64
HORVU2Hr1G030220.1	Barley	cytosol, mitochondrion, peroxisome, plastid	77.88	67.91
CDY11020	Canola	cytosol	32.28	65.9
KRH69617	Soybean	cytosol	30.02	31.07
KRH74545	Soybean	endoplasmic reticulum	29.8	30.84
KRG99414	Soybean	cytosol	29.35	30.37
KRH45615	Soybean	cytosol	29.35	30.37
KRH04335	Soybean	endoplasmic reticulum	27.09	27.4
KRH77207	Soybean	cytosol, extracellular	27.09	27.4
KRH58201	Soybean	mitochondrion	26.64	26.94
KRH28283	Soybean	cytosol, golgi	26.41	26.71
KRG96704	Soybean	cytosol	23.93	25.54
KRH68423	Soybean	cytosol	24.38	24.71
KRH33789	Soybean	cytosol	22.8	24.34
Zm00001d002925_P002	Maize	plastid	65.91	20.8

Protein Annotations

EntrezGene:100800985	Gene3D:2.60.40.1170	MapMan:22.5.2.2.3	Gene3D:3.30.450.60	EMBL:ACUP02002157	InterPro:AP2_Mu_C_sf
InterPro:AP_mu_sigma_su	InterPro:Clathrin_mu	EnsemblPlantsGene:GLYMA_04G029800	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030131	UniProt:I1JT85	InterPro:IPR028565	EnsemblPlants:KRH61131	ProteinID:KRH61131
ProteinID:KRH61131.1	InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PFAM:PF01217	PIRSF:PIRSF005992
PRINTS:PR00314	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF270	SUPFAM:SSF49447	SUPFAM:SSF64356
UniParc:UPI0002339F3B	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:2411114..2416765

Molecular Weight (calculated)

49787.8 Da

IEP (calculated)

7.235

GRAVY (calculated)

-0.164

Length

443 amino acids

Sequence
(BLAST)

001: MILQFFVLSQ RGDNIVYRDY RGEAQKGSAE TFFRKVKFWK EDAEGDAPPV FNIDGVNYFH VKVAGLLFVA TTRVNVSPSL VLELLQRIAR VIKDYLGVLN
101: EDSFRKNFVL VYELLDEVID FGYVQTTSTE DLKSYVFNEP IVIDAARMPP LGPASIFMQG TKRMPGTAIT KSVVANEPGG RKRDEIFVDV IEKISVTFNS
201: SGFILTSEID GTIQMKSYLT GNPEIRLALN EDLSIGTSDY RGSGAVILDD CNFHESVHLD SFDVDRTLSL VPPEGEFPVM NYRMTQPFKP PFRINALIEE
301: TGSLKAEVTI KVRAEFNSSI NANTVLVQMP LPSFTSRVTF ELEPGAVGHT TDFKEANKRL EWGLKKVVGG SEHTLRAKLT FSQELHGNIM KEAGPVSMTF
401: TVPMYNASRL QVKYLQIAKK SKAHNPYRWV RYVTQANSYV ARL

Best Arabidopsis Sequence Match ( AT4G24550.2 )
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I

Arabidopsis Description

AP4MAP4M [Source:UniProtKB/TrEMBL;Acc:A0A178UX13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.