Factsheet for Bra019220.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G24550.2	Thale cress	cytosol	84.2	86.25
Bra013813.1-P	Field mustard	cytosol	83.12	86.1
Bra010489.1-P	Field mustard	cytosol	83.77	85.43
CDX92642	Canola	cytosol	85.28	84.91
CDY11020	Canola	cytosol	38.96	82.95
Solyc04g076230.2.1	Tomato	cytosol	75.54	77.21
KRH16840	Soybean	cytosol	74.03	75.66
PGSC0003DMT400024188	Potato	cytosol	73.59	75.22
KRH72454	Soybean	cytosol	65.37	74.94
KRH61131	Soybean	cytosol, nucleus	71.64	74.72
EER97557	Sorghum	cytosol, peroxisome, plastid	72.51	74.44
TraesCS2B01G191200.1	Wheat	golgi	71.86	73.61
Os07t0620300-01	Rice	plasma membrane	70.78	72.51
KRH51806	Soybean	cytosol	60.17	72.21
TraesCS2D01G172100.1	Wheat	peroxisome	68.83	70.51
GSMUA_Achr10P...	Banana	cytosol	58.87	68.0
VIT_18s0001g13000.t01	Wine grape	cytosol	71.21	66.2
GSMUA_Achr6P10200_001	Banana	cytosol	59.96	66.11
HORVU2Hr1G030220.1	Barley	cytosol, mitochondrion, peroxisome, plastid	71.86	65.35
Bra031752.1-P	Field mustard	cytosol	27.49	29.95
Bra031481.1-P	Field mustard	cytosol	27.71	29.91
Bra019904.1-P	Field mustard	cytosol	27.71	29.91
Bra025009.1-P	Field mustard	cytosol	24.46	25.8
Bra022052.1-P	Field mustard	cytosol	24.46	25.8
Bra017537.1-P	Field mustard	cytosol	24.24	25.57
Bra027924.1-P	Field mustard	cytosol	22.08	24.82
Zm00001d002925_P002	Maize	plastid	64.07	21.08

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.5.2.2.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	EnsemblPlantsGene:Bra019220	EnsemblPlants:Bra019220.1
EnsemblPlants:Bra019220.1-P	InterPro:Clathrin_mu	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0030131	InterPro:IPR028565	InterPro:Longin-like_dom_sf	UniProt:M4DRS7	InterPro:MHD	PFAM:PF00928
PIRSF:PIRSF005992	PRINTS:PR00314	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF270	SUPFAM:SSF49447
SUPFAM:SSF64356	UniParc:UPI0002540FD9	:	:	:	:

Description

AT4G24550 (E=5e-232) | clathrin adaptor complexes medium subunit family protein

Coordinates

chrA03:+:25629360..25632187

Molecular Weight (calculated)

52273.9 Da

IEP (calculated)

8.301

GRAVY (calculated)

-0.100

Length

462 amino acids

Sequence
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFVGIIVLNV DGVNYFHVKV VGLYFVATTR VNVSPFLVLE LLERIARVIK
101: DYLGVLNEDS FRKNFVLVYE LLDEVIVRFW LRANYINRGI EVLYVFNDPI LIAPARLQPI DPAAIFTQGA KRMPGTAVTK SVVANDPGGR RREEIFVDII
201: EKISVTFSSS GYILTSEIDG TIQMKSYLSG NPEIRLALNE DLNIGRGGGL SVYDYRSSPG SGVILDDCNF HESVRLDSFD SDRTLSLVPP DGEFPVMNYR
301: MTQEFRPPFH VNTLIEEAGR IKAEVTIKIR AEFPSDIIAN TIAVQMPLPN YTSRASFELE HDAVGQKTDF KETSKMLEWS LKKASIVGGA EHTLRAKLTF
401: SQEFHGNITK EAGPVSMTFT IPMYNVSKLQ VKYLQIAKKS SSYNPYRWVR YVTQANSYVA RI

Best Arabidopsis Sequence Match ( AT4G24550.2 )
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I

Arabidopsis Description

AP4MAP4M [Source:UniProtKB/TrEMBL;Acc:A0A178UX13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.