Factsheet for Bra025009.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63050	Canola	cytosol	99.77	99.77
Bra017537.1-P	Field mustard	cytosol	99.09	99.09
Bra022052.1-P	Field mustard	cytosol	99.09	99.09
VIT_02s0012g00910.t01	Wine grape	cytosol, extracellular	94.75	94.75
GSMUA_Achr4P28880_001	Banana	cytosol	94.75	94.75
KRH77207	Soybean	cytosol, extracellular	94.52	94.52
Solyc08g006960.2.1	Tomato	cytosol, extracellular	94.52	94.52
PGSC0003DMT400052825	Potato	cytosol, extracellular	94.29	94.29
AT5G46630.2	Thale cress	cytosol	94.75	94.1
EES07425	Sorghum	cytosol, extracellular	94.06	94.06
Os02t0690700-01	Rice	plasma membrane	94.06	94.06
KRH58201	Soybean	mitochondrion	93.84	93.84
KRH04335	Soybean	endoplasmic reticulum	93.61	93.61
KRH28283	Soybean	cytosol, golgi	93.38	93.38
TraesCS6A01G263800.1	Wheat	extracellular	92.92	92.92
TraesCS6D01G251100.1	Wheat	extracellular	92.92	92.92
TraesCS6B01G290800.1	Wheat	golgi	92.69	92.69
Solyc06g061150.2.1	Tomato	nucleus	92.47	92.26
HORVU6Hr1G066890.2	Barley	mitochondrion	92.01	85.38
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	89.5	75.1
GSMUA_Achr2P12100_001	Banana	cytosol	95.43	70.25
Bra019904.1-P	Field mustard	cytosol	39.5	40.42
Bra031752.1-P	Field mustard	cytosol	38.81	40.09
Bra031481.1-P	Field mustard	cytosol	38.58	39.49
Bra013813.1-P	Field mustard	cytosol	28.31	27.8
Bra010489.1-P	Field mustard	cytosol	28.08	27.15
Bra019220.1-P	Field mustard	cytosol	25.8	24.46
Bra027924.1-P	Field mustard	cytosol	21.23	22.63

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.3.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	EnsemblPlantsGene:Bra025009	EnsemblPlants:Bra025009.1
EnsemblPlants:Bra025009.1-P	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565	InterPro:Longin-like_dom_sf	UniProt:M4E8A3	InterPro:MHD
PFAM:PF00928	PIRSF:PIRSF005992	PRINTS:PR00314	ScanProsite:PS00990	PFscan:PS51072	PANTHER:PTHR10529
PANTHER:PTHR10529:SF278	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI000253FB78	SEG:seg	:

Description

AT5G46630 (E=3e-242) | clathrin adaptor complexes medium subunit family protein

Coordinates

chrA06:-:24662774..24665501

Molecular Weight (calculated)

49341.2 Da

IEP (calculated)

9.536

GRAVY (calculated)

-0.086

Length

438 amino acids

Sequence
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RTYRDDVGGN MVDAFRTHIM QTKELGNCPV RQIGGCSFVY MRISNVYIVI VVSSNANVAC AFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP KDKPVPNATL QVTGAVGWRR EGLSYKKNEV FLDIVESVNL LMSSKGNVLR
201: CDVTGKVLMK CFLSGMPDLK LGLNDKIGLE KESEMKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTINE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF QVTTGRAKYN PSIDCLVWKI RKFPGQTEST LSAEIELIST MGEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSYEIRC

Best Arabidopsis Sequence Match ( AT5G46630.1 )
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RTYRDDVGGN MVDAFRTHIM QTKELGNCPV RQIGGCSFVY MRISNVYIVI VVSSNANVAC GFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP KDKPVPNATL QVTGAVGWRR EGLAYKKNEV FLDIVESVNL LMSSKGNVLR
201: CDVTGKVLMK CFLSGMPDLK LGLNDKIGLE KESEMKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF QVTTGRAKYN PSIDCLVWKI RKFPGQTEST LSAEIELIST MGEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSYEIRC

Arabidopsis Description

Clathrin adaptor complexes medium subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4KHJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.