Factsheet for Bra027924.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra017998.1-P
Bra019588.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56590.1	Bra017998.1-P	AT3G49250.1	21798944
AT1G56590.1	Bra019588.1-P	AT3G49250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G56590.1	Thale cress	cytosol	95.13	94.22
CDX95277	Canola	cytosol	98.54	93.1
CDY41703	Canola	cytosol	97.81	89.14
KRG96704	Soybean	cytosol	80.05	79.28
Solyc01g100820.2.1	Tomato	cytosol	80.05	79.28
KRH33789	Soybean	cytosol	79.56	78.8
VIT_14s0060g00840.t01	Wine grape	cytosol	79.56	78.8
PGSC0003DMT400007122	Potato	cytosol	76.16	78.05
GSMUA_Achr5P21080_001	Banana	cytosol	77.13	76.2
KRH68423	Soybean	cytosol	80.78	75.97
EES06180	Sorghum	cytosol	71.05	70.02
Os05t0383100-01	Rice	cytosol	69.59	68.59
TraesCS1D01G240100.2	Wheat	cytosol	68.37	67.39
TraesCS1A01G240000.1	Wheat	cytosol	68.13	67.15
TraesCS1B01G252100.2	Wheat	cytosol	68.13	67.15
HORVU1Hr1G057140.1	Barley	cytosol	68.13	67.15
Zm00001d044264_P001	Maize	cytosol	47.69	65.55
Zm00001d054005_P006	Maize	cytosol	69.1	65.29
Zm00001d006386_P001	Maize	cytosol, plastid	38.2	53.77
Zm00001d002305_P001	Maize	mitochondrion	46.96	45.09
Zm00001d049311_P001	Maize	cytosol	23.6	42.92
Zm00001d021311_P001	Maize	plastid	20.68	36.64
Zm00001d032192_P001	Maize	extracellular, golgi	28.71	27.13
Bra031752.1-P	Field mustard	cytosol	27.25	26.42
Bra031481.1-P	Field mustard	cytosol	27.25	26.17
Bra019904.1-P	Field mustard	cytosol	27.25	26.17
Bra013813.1-P	Field mustard	cytosol	26.52	24.44
Bra010489.1-P	Field mustard	cytosol	26.52	24.06
Bra019220.1-P	Field mustard	cytosol	24.82	22.08
Bra025009.1-P	Field mustard	cytosol	22.63	21.23
Bra022052.1-P	Field mustard	cytosol	22.63	21.23
Bra017537.1-P	Field mustard	cytosol	22.63	21.23

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.5.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	EnsemblPlantsGene:Bra027924	EnsemblPlants:Bra027924.1
EnsemblPlants:Bra027924.1-P	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009605	GO:GO:0009606
GO:GO:0009628	GO:GO:0009630	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131
InterPro:IPR028565	InterPro:Longin-like_dom_sf	UniProt:M4EGL0	InterPro:MHD	PFAM:PF00928	PIRSF:PIRSF005992
PRINTS:PR00314	ScanProsite:PS00990	PFscan:PS51072	PANTHER:PTHR43967	PANTHER:PTHR43967:SF2	SUPFAM:SSF49447
SUPFAM:SSF64356	UniParc:UPI00025421AE	:	:	:	:

Description

AT1G56590 (E=5e-233) | clathrin adaptor complexes medium subunit family protein

Coordinates

chrA09:+:9883910..9885912

Molecular Weight (calculated)

45801.5 Da

IEP (calculated)

5.462

GRAVY (calculated)

0.012

Length

411 amino acids

Sequence
(BLAST)

001: MLQCIFLLSD SGEVMLEKQL TGHRVDRSIC AWFWDQADSF KSLPVIASPT HYLFQIVRDG ITFLACTQVE MPPLMAIEFL CRVADVLSDY LGGLNEDLVK
101: DNFIIVYELL DEMIDNGFPL TTEPNILREM IAPPNLVSKM LSVVTGNASN VSDTLPSGAG SCVPWRPTDP KYSSNEVYVD LVEEMDAIVN RDGELVKCEI
201: YGEVQMSSQL TGFPDLTLSF ANPSVLEDMR FHPCVRFRPW ESHQVLSFVP PDGQFKLMSY RVKKLKNTPL YVKPQITSDS GTCRVSVLVG IRSDPGKTIE
301: SITLSFQLPH CVSSADLSSN HGTVTILSNK TCTWTIGRIP SDKTPCLSGT LALETGLERL HVYPTFKVGF KIMGIALSGL RIEKLDLKTI PPRLYKGFRA
401: QTRAGEFDVR L

Best Arabidopsis Sequence Match ( AT1G56590.1 )
(BLAST)

001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL

Arabidopsis Description

AP3MAP-3 complex subunit mu [Source:UniProtKB/Swiss-Prot;Acc:F4I562]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.