Factsheet for Zm00001d044264_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d013511_P001
Zm00001d050870_P001
Zm00001d053353_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56590.1	Zm00001d002027_P002	AT1G71230.1	21798944
AT1G56590.1	Zm00001d013511_P001	AT3G49250.1	21798944
AT1G56590.1	Zm00001d050870_P001	AT3G49250.1	21798944
AT1G56590.1	Zm00001d053353_P001	AT3G49250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006386_P001	Maize	cytosol, plastid	67.89	69.52
EES06180	Sorghum	cytosol	93.31	66.91
Zm00001d054005_P006	Maize	cytosol	96.66	66.44
Os05t0383100-01	Rice	cytosol	85.95	61.63
TraesCS1B01G252100.2	Wheat	cytosol	84.28	60.43
TraesCS1D01G240100.2	Wheat	cytosol	84.28	60.43
TraesCS1A01G240000.1	Wheat	cytosol	84.28	60.43
HORVU1Hr1G057140.1	Barley	cytosol	83.95	60.19
Zm00001d002305_P001	Maize	mitochondrion	82.27	57.48
Zm00001d049311_P001	Maize	cytosol	40.47	53.54
GSMUA_Achr5P21080_001	Banana	cytosol	72.24	51.92
VIT_14s0060g00840.t01	Wine grape	cytosol	71.24	51.33
PGSC0003DMT400007122	Potato	cytosol	68.23	50.87
KRH33789	Soybean	cytosol	70.23	50.6
KRG96704	Soybean	cytosol	69.9	50.36
Solyc01g100820.2.1	Tomato	cytosol	68.23	49.16
KRH68423	Soybean	cytosol	69.9	47.83
Bra027924.1-P	Field mustard	cytosol	65.55	47.69
AT1G56590.1	Thale cress	cytosol	64.88	46.75
Zm00001d021311_P001	Maize	plastid	35.79	46.12
CDX95277	Canola	cytosol	64.88	44.6
CDY41703	Canola	cytosol	65.22	43.24
Zm00001d032192_P001	Maize	extracellular, golgi	45.15	31.03
Zm00001d052338_P001	Maize	cytosol	4.35	22.03
Zm00001d036168_P001	Maize	mitochondrion	14.72	18.11
Zm00001d011676_P001	Maize	extracellular, plasma membrane	24.08	16.78
Zm00001d043726_P001	Maize	cytosol	23.75	16.55
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	22.07	12.64
Zm00001d002925_P002	Maize	plastid	22.41	4.77

Protein Annotations

EnsemblPlants:Zm00001d044264_P001	EnsemblPlants:Zm00001d044264_T001	EnsemblPlantsGene:Zm00001d044264	Gene3D:2.60.40.1170	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	InterPro:AP2_Mu_C_sf	InterPro:IPR028565	InterPro:MHD
PANTHER:PTHR43967	PANTHER:PTHR43967:SF2	PFAM:PF00928	PFscan:PS51072	ProteinID:ONM40573.1	SUPFAM:SSF49447
UniParc:UPI000842818D	UniProt:A0A1D6NJZ7	MapMan:22.1.5.3	:	:	:

Description

AP-3 complex subunit mu

Coordinates

chr3:-:223330233..223332566

Molecular Weight (calculated)

32827.8 Da

IEP (calculated)

8.348

GRAVY (calculated)

-0.104

Length

299 amino acids

Sequence
(BLAST)

001: MMDNVFPLTT EPNILKEMIT PPNIVNKMLN VVTGKSSTLG SKLPDAAASF VPWRRTTVND ANNEVYVNIV AELDACVNRE GVLVKCEAYG EVQVNCSLPG
101: VPELTMSFAN TAIINDVTFH PCVRFRPWES NQILSFVPPD GQFKLMSYRV QKLKKTPIYV KPQLTSDSGN CRVSVMVGIR NDPGKPIDSI TVQFQLPPLI
201: VSADLTTNYG TVDILADKTC LWTIGQIPKD KAPALSGNLR LEEGLAQLHA LPTFQVKFGI MGVAISGLQN DKLDVKNTPN APYKGFRAQT QAGKYEVRS

Best Arabidopsis Sequence Match ( AT1G56590.1 )
(BLAST)

001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL

Arabidopsis Description

AP3MAP-3 complex subunit mu [Source:UniProtKB/Swiss-Prot;Acc:F4I562]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.