Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 5
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_03s0038g04360.t01 | |
| VIT_16s0098g01820.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G56590.1 | VIT_03s0038g04360.t01 | AT1G71230.1 | 21798944 |
| AT1G56590.1 | VIT_16s0098g01820.t01 | AT3G49250.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG96704 | Soybean | cytosol | 83.61 | 83.61 |
| Solyc01g100820.2.1 | Tomato | cytosol | 82.89 | 82.89 |
| KRH33789 | Soybean | cytosol | 82.65 | 82.65 |
| PGSC0003DMT400007122 | Potato | cytosol | 79.52 | 82.29 |
| GSMUA_Achr5P21080_001 | Banana | cytosol | 81.2 | 81.01 |
| KRH68423 | Soybean | cytosol | 84.34 | 80.09 |
| Bra027924.1-P | Field mustard | cytosol | 78.8 | 79.56 |
| AT1G56590.1 | Thale cress | cytosol | 77.83 | 77.83 |
| CDX95277 | Canola | cytosol | 78.55 | 74.94 |
| TraesCS1D01G240100.2 | Wheat | cytosol | 73.25 | 72.9 |
| TraesCS1A01G240000.1 | Wheat | cytosol | 73.01 | 72.66 |
| TraesCS1B01G252100.2 | Wheat | cytosol | 73.01 | 72.66 |
| HORVU1Hr1G057140.1 | Barley | cytosol | 73.01 | 72.66 |
| EES06180 | Sorghum | cytosol | 72.53 | 72.18 |
| Os05t0383100-01 | Rice | cytosol | 72.29 | 71.94 |
| Zm00001d044264_P001 | Maize | cytosol | 51.33 | 71.24 |
| CDY41703 | Canola | cytosol | 77.35 | 71.18 |
| Zm00001d054005_P006 | Maize | cytosol | 72.53 | 69.2 |
| Zm00001d006386_P001 | Maize | cytosol, plastid | 39.28 | 55.82 |
| Zm00001d002305_P001 | Maize | mitochondrion | 49.16 | 47.66 |
| Zm00001d049311_P001 | Maize | cytosol | 25.78 | 47.35 |
| Zm00001d021311_P001 | Maize | plastid | 21.2 | 37.93 |
| Zm00001d032192_P001 | Maize | extracellular, golgi | 27.95 | 26.67 |
| VIT_00s0225g00220.t01 | Wine grape | cytosol | 26.51 | 25.7 |
| VIT_19s0015g02330.t01 | Wine grape | extracellular | 4.34 | 25.35 |
| VIT_18s0001g13000.t01 | Wine grape | cytosol | 25.78 | 21.53 |
| VIT_02s0012g00910.t01 | Wine grape | cytosol, extracellular | 22.41 | 21.23 |
Protein Annotations
| EntrezGene:100251056 | wikigene:100251056 | Gene3D:2.60.40.1170 | MapMan:22.1.5.3 | Gene3D:3.30.450.60 | InterPro:AP2_Mu_C_sf |
| ProteinID:CBI39623 | ProteinID:CBI39623.3 | InterPro:Clathrin_mu | UniProt:D7UA59 | EMBL:FN596746 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009605 | GO:GO:0009606 | GO:GO:0009628 | GO:GO:0009630 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0016192 | GO:GO:0030131 | InterPro:IPR028565 | EntrezGene:LOC100251056 | wikigene:LOC100251056 | InterPro:Longin-like_dom_sf |
| InterPro:MHD | PFAM:PF00928 | PIRSF:PIRSF005992 | PRINTS:PR00314 | PFscan:PS51072 | PANTHER:PTHR43967 |
| PANTHER:PTHR43967:SF2 | SUPFAM:SSF49447 | SUPFAM:SSF64356 | UniParc:UPI00015C9EE2 | ArrayExpress:VIT_14s0060g00840 | EnsemblPlantsGene:VIT_14s0060g00840 |
| EnsemblPlants:VIT_14s0060g00840.t01 | unigene:Vvi.22822 | RefSeq:XP_002281428 | RefSeq:XP_002281428.1 | : | : |
Description
No Description!
Coordinates
chr14:+:671322..676730
Molecular Weight (calculated)
45969.6 Da
IEP (calculated)
5.445
GRAVY (calculated)
0.021
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQCIFLLSD SGEVMLEKQL TGHRVDRSIC DWFWEQTVSQ ADSTKLPPVI ASPTHYIFQI TREGITFLAC TQVEMPPLMG IEFLCRVADV LSDYLGGLNE
101: DVIKDNFVIV YELLDEMIDN GFPLTTEPNI LREMIALPNI VSKVLGVVTG NSSNVSNTLP GATASCVPWR STEPKHANNE VYVDLLEEMD AVINRDGILV
201: KCEIYGEVEV NSHLSGLPDL TLSFANPSIL NDVRFHPCVR FRPWESNNIL SFVPPDGQFK LMSYRVKKLR STPIYVKPQL TSDAGTCRLS VLVGIRSDPG
301: KTIDSVTVQF QLPPCILSAN LSSNHGTVSI LANKTCSWSI GRIPKDKAPS LSGTLTLETG MERLHVFPTF QVGFRIMGVA LSGLQIDTLD IKNLPSRPYK
401: GFRALTQAGQ YEVRS
101: DVIKDNFVIV YELLDEMIDN GFPLTTEPNI LREMIALPNI VSKVLGVVTG NSSNVSNTLP GATASCVPWR STEPKHANNE VYVDLLEEMD AVINRDGILV
201: KCEIYGEVEV NSHLSGLPDL TLSFANPSIL NDVRFHPCVR FRPWESNNIL SFVPPDGQFK LMSYRVKKLR STPIYVKPQL TSDAGTCRLS VLVGIRSDPG
301: KTIDSVTVQF QLPPCILSAN LSSNHGTVSI LANKTCSWSI GRIPKDKAPS LSGTLTLETG MERLHVFPTF QVGFRIMGVA LSGLQIDTLD IKNLPSRPYK
401: GFRALTQAGQ YEVRS
001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL
Arabidopsis Description
AP3MAP-3 complex subunit mu [Source:UniProtKB/Swiss-Prot;Acc:F4I562]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.