Factsheet for GSMUA_Achr5P21080_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56590.1	GSMUA_Achr10P...	AT1G71230.1	21798944
AT1G56590.1	GSMUA_Achr10P...	AT3G49250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0060g00840.t01	Wine grape	cytosol	81.01	81.2
KRG96704	Soybean	cytosol	78.85	79.04
Solyc01g100820.2.1	Tomato	cytosol	78.12	78.31
PGSC0003DMT400007122	Potato	cytosol	75.0	77.81
KRH33789	Soybean	cytosol	77.4	77.59
Bra027924.1-P	Field mustard	cytosol	76.2	77.13
AT1G56590.1	Thale cress	cytosol	76.2	76.39
KRH68423	Soybean	cytosol	79.09	75.29
EES06180	Sorghum	cytosol	75.24	75.06
Os05t0383100-01	Rice	cytosol	75.24	75.06
TraesCS1D01G240100.2	Wheat	cytosol	74.76	74.58
HORVU1Hr1G057140.1	Barley	cytosol	74.76	74.58
TraesCS1B01G252100.2	Wheat	cytosol	74.52	74.34
TraesCS1A01G240000.1	Wheat	cytosol	74.52	74.34
CDX95277	Canola	cytosol	75.96	72.64
Zm00001d044264_P001	Maize	cytosol	51.92	72.24
Zm00001d054005_P006	Maize	cytosol	73.32	70.11
CDY41703	Canola	cytosol	75.24	69.4
Zm00001d006386_P001	Maize	cytosol, plastid	39.9	56.85
Zm00001d002305_P001	Maize	mitochondrion	50.0	48.6
Zm00001d049311_P001	Maize	cytosol	24.76	45.58
Zm00001d021311_P001	Maize	plastid	21.39	38.36
Zm00001d032192_P001	Maize	extracellular, golgi	30.29	28.97
GSMUA_Achr7P17600_001	Banana	cytosol	25.72	25.0
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	25.72	25.0
GSMUA_Achr6P10200_001	Banana	cytosol	25.0	24.82
GSMUA_Achr10P...	Banana	cytosol	23.56	24.5
GSMUA_Achr1P25430_001	Banana	cytosol, extracellular	25.0	24.3
GSMUA_Achr4P28880_001	Banana	cytosol	22.12	21.0
GSMUA_Achr8P31910_001	Banana	cytosol	6.97	18.01
GSMUA_Achr2P12100_001	Banana	cytosol	22.12	15.46

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.5.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:Clathrin_mu	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009630	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030131	EnsemblPlantsGene:GSMUA_Achr5G21080_001	EnsemblPlants:GSMUA_Achr5P21080_001	EnsemblPlants:GSMUA_Achr5T21080_001	InterPro:IPR028565
InterPro:Longin-like_dom_sf	UniProt:M0T0D7	InterPro:MHD	PFAM:PF00928	PIRSF:PIRSF005992	PRINTS:PR00314
PFscan:PS51072	PANTHER:PTHR43967	PANTHER:PTHR43967:SF2	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI000295043D

Description

Putative AP-3 complex subunit mu-1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G21080_001]

Coordinates

chr5:+:22983557..22991420

Molecular Weight (calculated)

46457.3 Da

IEP (calculated)

5.840

GRAVY (calculated)

0.005

Length

416 amino acids

Sequence
(BLAST)

001: MLQCIFFLSD SGEVMLEKQM TGHRVDRSIC AWFWDYVLSQ GGDPSKILPV IASPTHYLFQ LFRDGIIFLA CTQVEMPPLM GIEFLCRVAD VLTDYLGGLN
101: EDLIKDNFII VYELLDEMMD NGFPLTTEPN ILREMITPPN IVSKMLSVVT GKNSNVSTRL PDATASCIPW RKTNMKHASN EVYVNLVEEI DAVFSRDGAL
201: VKCEIYGEVQ VDSHLPGLPD LTLSFSNPSI LNDMRFHPCV RFRPWESDQI LSFVPPDGEF KLMTYRVKKL KSTPIYVKPQ LTSDTGNCHI NVLVGVRNDP
301: GKTIDSITVQ FQLPFCVASA NLTSNHGTVN ILADKTCSWS IGQIPKDKSP SLSGNLVLET GLDRLHVFPV FQVGFKIMGV ALSGLQIHKL DIKNAPSQPY
401: KGFRALTQAG EYEVRS

Best Arabidopsis Sequence Match ( AT1G56590.1 )
(BLAST)

001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL

Arabidopsis Description

AP3MAP-3 complex subunit mu [Source:UniProtKB/Swiss-Prot;Acc:F4I562]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.