Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 4
- plastid 1
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
28056797
|
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0703600-01 | |
| Os05t0543100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G60780.1 | Os01t0703600-01 | AT1G60780.1 | 23543752 |
| AT1G60780.1 | Os05t0543100-01 | AT1G60780.1 | 23543752 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d043726_P001 | Maize | cytosol | 98.83 | 98.83 |
| EES01338 | Sorghum | cytosol | 98.83 | 98.83 |
| Zm00001d011676_P001 | Maize | extracellular, plasma membrane | 98.14 | 98.14 |
| TraesCS3D01G255100.2 | Wheat | cytosol | 96.97 | 96.97 |
| TraesCS3A01G254200.2 | Wheat | cytosol | 96.74 | 96.74 |
| HORVU3Hr1G066020.1 | Barley | cytosol | 96.5 | 96.5 |
| TraesCS3B01G286200.2 | Wheat | cytosol | 96.5 | 96.5 |
| VIT_00s0225g00220.t01 | Wine grape | cytosol | 93.71 | 93.93 |
| GSMUA_Achr7P17600_001 | Banana | cytosol | 93.47 | 93.69 |
| Os05t0543100-01 | Rice | plasma membrane | 93.71 | 93.49 |
| GSMUA_Achr2P06510_001 | Banana | cytosol, endoplasmic reticulum | 92.07 | 92.29 |
| GSMUA_Achr1P25430_001 | Banana | cytosol, extracellular | 90.68 | 90.89 |
| Solyc05g013340.2.1 | Tomato | plastid | 89.28 | 89.91 |
| CDY19316 | Canola | cytosol | 88.81 | 89.02 |
| CDX97909 | Canola | cytosol | 88.81 | 89.02 |
| Bra031752.1-P | Field mustard | cytosol | 87.88 | 88.92 |
| AT1G60780.1 | Thale cress | cytosol | 88.58 | 88.78 |
| Bra019904.1-P | Field mustard | cytosol | 88.58 | 88.78 |
| KRH45615 | Soybean | cytosol | 88.34 | 88.55 |
| KRH69617 | Soybean | cytosol | 88.34 | 88.55 |
| KRH74545 | Soybean | endoplasmic reticulum | 88.34 | 88.55 |
| KRG99414 | Soybean | cytosol | 88.34 | 88.55 |
| CDY54239 | Canola | cytosol | 88.34 | 88.55 |
| CDY61312 | Canola | cytosol | 88.34 | 88.55 |
| CDY46183 | Canola | cytosol | 87.88 | 88.08 |
| Bra031481.1-P | Field mustard | cytosol | 87.65 | 87.85 |
| CDY63681 | Canola | cytosol | 87.41 | 87.62 |
| PGSC0003DMT400002906 | Potato | mitochondrion | 44.76 | 87.27 |
| CDY63680 | Canola | cytosol | 87.18 | 86.37 |
| PGSC0003DMT400069426 | Potato | cytosol | 26.57 | 85.71 |
| Solyc04g026360.2.1 | Tomato | nucleus | 44.99 | 85.02 |
| AT1G10730.1 | Thale cress | cytosol | 84.15 | 84.35 |
| Solyc06g071650.1.1 | Tomato | cytosol, plastid | 80.65 | 83.17 |
| Solyc04g026380.2.1 | Tomato | cytosol | 45.22 | 82.55 |
| Zm00001d036168_P001 | Maize | mitochondrion | 40.33 | 71.19 |
| Os02t0690700-01 | Rice | plasma membrane | 38.93 | 38.13 |
| Os07t0620300-01 | Rice | plasma membrane | 34.5 | 32.82 |
| Os05t0383100-01 | Rice | cytosol | 24.48 | 25.18 |
Protein Annotations
| Gene3D:2.60.40.1170 | MapMan:22.1.2.3 | Gene3D:3.30.450.60 | EntrezGene:4324247 | InterPro:AP2_Mu_C_sf | InterPro:AP_mu_sigma_su |
| ProteinID:BAF05915.1 | ProteinID:BAS73912.1 | InterPro:Clathrin_mu | InterPro:Clathrin_mu_CS | ProteinID:EAZ13244.1 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030131 | InterPro:IPR028565 | InterPro:Longin-like_dom_sf |
| InterPro:MHD | EnsemblPlantsGene:Os01g0703600 | EnsemblPlants:Os01t0703600-01 | PFAM:PF00928 | PFAM:PF01217 | PIRSF:PIRSF005992 |
| PRINTS:PR00314 | ScanProsite:PS00990 | ScanProsite:PS00991 | PFscan:PS51072 | PANTHER:PTHR10529 | PANTHER:PTHR10529:SF338 |
| UniProt:Q0JK13 | SUPFAM:SSF49447 | SUPFAM:SSF64356 | UniParc:UPI00000ABC30 | RefSeq:XP_015622116.1 | SEG:seg |
Description
SPOTTED LEAF 28Clathrin-associated adaptor protein complex 1 medium subunit mu1 (AP1M1), Regulation of vesicular trafficking, Disease resistance (Os01t0703600-01);Similar to clathrin adaptor complexes medium subunit family protein. (Os01t0703600-02)
Coordinates
chr1:+:29166421..29170361
Molecular Weight (calculated)
48978.0 Da
IEP (calculated)
6.536
GRAVY (calculated)
-0.197
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGAVSALFL LDIKGRVLVW RDYRGDVSAL QAERFFTKLL DKEGDSEAHS PVVYDDAGVT YMFIQHNNVF LLTASRQNCN AASILLFLHR VVDVFKHYFE
101: ELEEESLRDN FVVVYELLDE MMDFGYPQYT EAKILSEFIK TDAYRMEVSQ RPPMAVTNAV SWRSEGIRYK KNEVFLDVVE SVNILVNSNG QIVRSDVVGA
201: LKMRTYLSGM PECKLGLNDR VLLEAQGRAT KGKAIDLDDI KFHQCVRLAR FENDRTISFI PPDGSFDLMT YRLSTQVKPL IWVEAQIEKH SRSRIELMVK
301: ARSQFKERST ATNVEIEVPV PSDATNPNIR TSMGSAAYAP ERDAMVWKVK SFPGGKDYMC RAEFSLPSIT AEEAAPEKKA PIRVKFEIPY FTVSGIQVRY
401: LKIIEKSGYQ ALPWVRYITM AGEYELRLI
101: ELEEESLRDN FVVVYELLDE MMDFGYPQYT EAKILSEFIK TDAYRMEVSQ RPPMAVTNAV SWRSEGIRYK KNEVFLDVVE SVNILVNSNG QIVRSDVVGA
201: LKMRTYLSGM PECKLGLNDR VLLEAQGRAT KGKAIDLDDI KFHQCVRLAR FENDRTISFI PPDGSFDLMT YRLSTQVKPL IWVEAQIEKH SRSRIELMVK
301: ARSQFKERST ATNVEIEVPV PSDATNPNIR TSMGSAAYAP ERDAMVWKVK SFPGGKDYMC RAEFSLPSIT AEEAAPEKKA PIRVKFEIPY FTVSGIQVRY
401: LKIIEKSGYQ ALPWVRYITM AGEYELRLI
001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFTKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV
Arabidopsis Description
AP1M2AP-1 complex subunit mu-2 [Source:UniProtKB/Swiss-Prot;Acc:O22715]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.