Factsheet for Solyc11g032150.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

plastid 3
cytosol 1
nucleus 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g111900.2.1
Solyc02g078550.2.1
Solyc04g082460.2.1
Solyc12g009110.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49250.1	Solyc04g082460.2.1	AT1G20630.1	21798944
AT3G49250.1	Solyc02g078550.2.1	AT4G21670.1	18541146
AT3G49250.1	Solyc01g111900.2.1	AT4G35160.1	21798944
AT3G49250.1	Solyc12g009110.1.1	AT4G35160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g071800.1.1	Tomato	cytosol	66.67	29.63
Solyc11g032160.1.1	Tomato	endoplasmic reticulum, extracellular	37.5	19.29
Solyc03g071790.1.1	Tomato	cytosol	59.72	18.45
Solyc03g071820.1.1	Tomato	cytosol	27.78	13.16
Zm00001d053353_P001	Maize	cytosol	45.83	12.36
GSMUA_Achr10P...	Banana	cytosol	54.17	11.44
Zm00001d013511_P001	Maize	cytosol	44.44	11.11
Bra019588.1-P	Field mustard	cytosol	54.17	10.13
Solyc03g083210.2.1	Tomato	cytosol, nucleus	61.11	10.07
CDY08119	Canola	cytosol, plastid	56.94	9.72
CDY00194	Canola	cytosol	54.17	9.65
KRH53504	Soybean	plastid	54.17	9.56
AT3G49250.1	Thale cress	cytosol	55.56	9.52
CDY05915	Canola	cytosol	55.56	9.52
Bra017998.1-P	Field mustard	cytosol	56.94	9.49
CDX86984	Canola	cytosol	52.78	9.45
KXG31464	Sorghum	cytosol	52.78	9.38
KRH64437	Soybean	cytosol, nucleus	55.56	9.17
VIT_16s0098g01820.t01	Wine grape	cytosol	52.78	8.82
Os01t0235200-02	Rice	cytosol	50.0	8.61
Solyc06g051990.2.1	Tomato	cytosol	52.78	8.14
TraesCS3A01G158200.1	Wheat	cytosol	51.39	8.11
TraesCS3B01G185200.1	Wheat	cytosol	51.39	8.11
TraesCS3D01G165900.1	Wheat	cytosol	51.39	8.11
HORVU3Hr1G057390.1	Barley	cytosol	48.61	7.31
Solyc03g083170.2.1	Tomato	cytosol	65.28	6.04
Solyc03g083130.1.1	Tomato	cytosol	38.89	2.13
Zm00001d050870_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc11g032150.1.1	EnsemblPlantsGene:Solyc11g032150.1	PANTHER:PTHR33566	PANTHER:PTHR33566:SF1	UniParc:UPI0002769C69	UniProt:K4D7Q0
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:25504786..25505004

Molecular Weight (calculated)

8255.1 Da

IEP (calculated)

9.158

GRAVY (calculated)

0.087

Length

72 amino acids

Sequence
(BLAST)

1: MNIINIDTAN LYCVTRSGHG LRETLFYVLF SLLQVYKTKV DMKEELPFID NGAISSDNFI IRSARVFPLG KR

Best Arabidopsis Sequence Match ( AT3G49250.1 )
(BLAST)

001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR

Arabidopsis Description

DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.