Factsheet for Solyc04g082460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
peroxisome 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
unclear: 26455813
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025653	Potato	peroxisome	98.17	98.17
KRH17522	Soybean	mitochondrion	88.82	88.82
KRH06008	Soybean	endoplasmic reticulum, mitochondrion, nucleus	88.82	88.82
Bra012239.1-P	Field mustard	cytosol	88.62	88.62
CDY31877	Canola	cytosol	88.62	88.62
CDY01363	Canola	cytosol	88.41	88.41
KRH51611	Soybean	peroxisome	88.21	88.21
KRH60933	Soybean	endoplasmic reticulum, extracellular, mitochondrion, nucleus	87.8	87.8
AT1G20630.1	Thale cress	cytosol	87.6	87.6
Solyc02g082760.2.1	Tomato	plastid	86.18	86.18
CDY29518	Canola	cytoskeleton, cytosol, peroxisome	85.98	85.98
CDY31490	Canola	cytoskeleton, cytosol, peroxisome	85.77	85.77
Bra025833.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	85.77	85.77
Solyc01g100630.1.1	Tomato	cytosol	8.33	78.85
Solyc12g094620.1.1	Tomato	extracellular, plastid	78.25	78.25
Solyc01g099420.1.1	Tomato	cytosol	13.62	70.53
Solyc01g100640.2.1	Tomato	peroxisome	18.29	62.5

Protein Annotations

KEGG:00380+1.11.1.6	KEGG:00630+1.11.1.6	MapMan:10.2.1	Gene3D:2.40.180.10	InterPro:Catalase	InterPro:Catalase_AS
InterPro:Catalase_clade1/3	InterPro:Catalase_core	InterPro:Catalase_core_sf	InterPro:Catalase_haem_BS	InterPro:Catalase_immune_responsive	InterPro:Catalase_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0004096	GO:GO:0004601	GO:GO:0005488	GO:GO:0005575
GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005777
GO:GO:0005829	GO:GO:0005840	GO:GO:0006950	GO:GO:0006979	GO:GO:0006995	GO:GO:0007154
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009416	GO:GO:0009536	GO:GO:0009605
GO:GO:0009628	GO:GO:0009719	GO:GO:0009737	GO:GO:0009941	GO:GO:0009970	GO:GO:0009987
GO:GO:0009991	GO:GO:0016036	GO:GO:0016491	GO:GO:0020037	GO:GO:0022626	GO:GO:0030312
GO:GO:0042542	GO:GO:0042744	GO:GO:0046686	GO:GO:0046872	GO:GO:0050897	GO:GO:0055114
GO:GO:0098869	InterPro:IPR018028	InterPro:IPR037060	UniProt:K4BVX3	PFAM:PF00199	PFAM:PF06628
PIRSF:PIRSF038928	PRINTS:PR00067	ScanProsite:PS00437	ScanProsite:PS00438	PFscan:PS51402	PANTHER:PTHR11465
PANTHER:PTHR11465:SF34	SMART:SM01060	SUPFAM:SSF56634	EnsemblPlantsGene:Solyc04g082460.2	EnsemblPlants:Solyc04g082460.2.1	UniParc:UPI0002766688

Description

Catalase-1 [Source:Projected from Arabidopsis thaliana (AT1G20630) UniProtKB/Swiss-Prot;Acc:Q96528]

Coordinates

chr4:+:66103491..66107965

Molecular Weight (calculated)

56832.4 Da

IEP (calculated)

7.276

GRAVY (calculated)

-0.536

Length

492 amino acids

Sequence
(BLAST)

001: MDPYKYRPSS AANSPFMTTN SGAPVYNNNS SLTVGTRGPI LLEDYHLLEK IANFDRERIP ERVVHARGAS AKGFFEVTHD ISHLTCADFL RAPGVQTPVI
101: VRFSTVIHER GSPETLRDPR GFAVKFYTRE GNFDLVGNNF PVFFVRDGMK FPDMVHALKP NPKSHIQENW RILDFFSHHP ESLHMFSFLF DDLGIPQDYR
201: HMDGFGVNTY MLINKAGKAQ YVKFHWKPTC GVKCLLDEEA IKVGGSNHSH ATKDLYDSIA AGNYPEWKLF IQTIDPDHED RFDFDPLDVT KIWPEDILPL
301: QPVGRLVLNR NIDNFFAENE QLAFCPAIIV PGVYYSDDKL LQTRVFSYAD TQRHRLGPNY LQLPVNAPKC AHHNNHHEGL MNFMHRDEEV NYLPSRLDPC
401: RHAEQYPIPP RVLTGKREKV IIEKENNFKQ PGEHYRSWAP DRQERFLCRW VDALSDPRAT HEIRSIWISY WSQADKSLGQ KLASRLNIRP TM

Best Arabidopsis Sequence Match ( AT4G35090.1 )
(BLAST)

001: MDPYKYRPAS SYNSPFFTTN SGAPVWNNNS SMTVGPRGPI LLEDYHLVEK LANFDRERIP ERVVHARGAS AKGFFEVTHD ISNLTCADFL RAPGVQTPVI
101: VRFSTVIHER GSPETLRDPR GFAVKFYTRE GNFDLVGNNF PVFFIRDGMK FPDMVHALKP NPKSHIQENW RILDFFSHHP ESLNMFTFLF DDIGIPQDYR
201: HMDGSGVNTY MLINKAGKAH YVKFHWKPTC GVKSLLEEDA IRVGGTNHSH ATQDLYDSIA AGNYPEWKLF IQIIDPADED KFDFDPLDVT KTWPEDILPL
301: QPVGRMVLNK NIDNFFAENE QLAFCPAIIV PGIHYSDDKL LQTRVFSYAD TQRHRLGPNY LQLPVNAPKC AHHNNHHEGF MNFMHRDEEV NYFPSRYDQV
401: RHAEKYPTPP AVCSGKRERC IIEKENNFKE PGERYRTFTP ERQERFIQRW IDALSDPRIT HEIRSIWISY WSQADKSLGQ KLASRLNVRP SI

Arabidopsis Description

CAT2catalase 2 [Source:TAIR;Acc:AT4G35090]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.