CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, extracellular, nucleus

Predictor Summary:

nucleus 1
peroxisome 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
extracellular: 25724908
mitochondrion: 25806999
endoplasmic reticulum: 27224218

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51611	Soybean	peroxisome	98.78	98.78
KRH17522	Soybean	mitochondrion	90.04	90.04
KRH06008	Soybean	endoplasmic reticulum, mitochondrion, nucleus	89.84	89.84
PGSC0003DMT400025653	Potato	peroxisome	88.21	88.21
Solyc04g082460.2.1	Tomato	plastid	87.8	87.8
Bra012239.1-P	Field mustard	cytosol	85.98	85.98
CDY31877	Canola	cytosol	85.98	85.98
AT1G20630.1	Thale cress	cytosol	85.77	85.77
CDY01363	Canola	cytosol	85.77	85.77
CDY29518	Canola	cytoskeleton, cytosol, peroxisome	83.54	83.54
Bra025833.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	83.33	83.33
CDY31490	Canola	cytoskeleton, cytosol, peroxisome	83.33	83.33

Protein Annotations

KEGG:00380+1.11.1.6	KEGG:00630+1.11.1.6	MapMan:10.2.1	Gene3D:2.40.180.10	EntrezGene:547511	UniProt:A0A0R0K8D9
EMBL:AF035255	InterPro:Catalase	InterPro:Catalase_AS	InterPro:Catalase_clade1/3	InterPro:Catalase_core	InterPro:Catalase_core_sf
InterPro:Catalase_haem_BS	InterPro:Catalase_immune_responsive	InterPro:Catalase_sf	EnsemblPlantsGene:GLYMA_04G017500	GO:GO:0003674	GO:GO:0003824
GO:GO:0004096	GO:GO:0004601	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005777	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009514	GO:GO:0009987	GO:GO:0016491	GO:GO:0020037
GO:GO:0042542	GO:GO:0042744	GO:GO:0046872	GO:GO:0055114	GO:GO:0098869	InterPro:IPR018028
InterPro:IPR037060	EnsemblPlants:KRH60933	ProteinID:KRH60933	ProteinID:KRH60933.1	UniProt:O48561	PFAM:PF00199
PFAM:PF06628	PIRSF:PIRSF038928	PRINTS:PR00067	ScanProsite:PS00437	ScanProsite:PS00438	PFscan:PS51402
PANTHER:PTHR11465	PANTHER:PTHR11465:SF34	SMART:SM01060	SUPFAM:SSF56634	UniParc:UPI0000127040	:

Description

CAT4hypothetical protein

Coordinates

chr4:-:1365544..1370335

Molecular Weight (calculated)

56739.9 Da

IEP (calculated)

7.302

GRAVY (calculated)

-0.560

Length

492 amino acids

Sequence
(BLAST)

001: MDPYKHRPSS AFNSPFWTTN SGAPIWNNNS SLTVGARGPI LLEDYHLVEK LANFDRERIP ERVVHARGAS AKGFFEVTHD ISHLTCADFL RAPGVQTPVI
101: VRFSTVIHER GSPETLRDPR GFAVKFYTRE GNFDLVGNNL PVFFVRDGMK FPDMVHALKP NPKNHIQENW RILDFFSHFP ESLHMFTFLF DDLGVPQDYR
201: HMDGFGVNTY TLINKAGKAV YVKFHWKTTS GIKCLLEEEA IKVGGANHSH ATQDLHDSIA AGNYPEWKLF VQTIDPEHED KFDFDPLDVT KTWPEDIIPL
301: QPVGRLVLNK NIDNFFAENE QLAFCPAIVV PGVYYSDDKM LQTRIFSYAD SQRHRLGPNY LQLPANAPKC AHHNNHHEGF MNFIHRDEEV NYFPSRYDPV
401: RHAERFPIPP AICSGRREKC GIEKENNFKQ PGERYRSWAP DRQDRFARRW VDALSDPRVT HEIRSVWISY WSQADRSLGQ KIASHLSTRP NI

Best Arabidopsis Sequence Match ( AT4G35090.1 )
(BLAST)

001: MDPYKYRPAS SYNSPFFTTN SGAPVWNNNS SMTVGPRGPI LLEDYHLVEK LANFDRERIP ERVVHARGAS AKGFFEVTHD ISNLTCADFL RAPGVQTPVI
101: VRFSTVIHER GSPETLRDPR GFAVKFYTRE GNFDLVGNNF PVFFIRDGMK FPDMVHALKP NPKSHIQENW RILDFFSHHP ESLNMFTFLF DDIGIPQDYR
201: HMDGSGVNTY MLINKAGKAH YVKFHWKPTC GVKSLLEEDA IRVGGTNHSH ATQDLYDSIA AGNYPEWKLF IQIIDPADED KFDFDPLDVT KTWPEDILPL
301: QPVGRMVLNK NIDNFFAENE QLAFCPAIIV PGIHYSDDKL LQTRVFSYAD TQRHRLGPNY LQLPVNAPKC AHHNNHHEGF MNFMHRDEEV NYFPSRYDQV
401: RHAEKYPTPP AVCSGKRERC IIEKENNFKE PGERYRTFTP ERQERFIQRW IDALSDPRIT HEIRSIWISY WSQADKSLGQ KLASRLNVRP SI

Arabidopsis Description

CAT2catalase 2 [Source:TAIR;Acc:AT4G35090]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.