CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
plastid 2
peroxisome 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

peroxisome: 19073762
nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 19073762 doi

Y Arai, M Hayashi, M Nishimura

Department of Cell Biology, National Institute for Basic Biology, Okazaki 444-8585 Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60933	Soybean	endoplasmic reticulum, extracellular, mitochondrion, nucleus	98.78	98.78
KRH06008	Soybean	endoplasmic reticulum, mitochondrion, nucleus	89.43	89.43
KRH17522	Soybean	mitochondrion	89.43	89.43
PGSC0003DMT400025653	Potato	peroxisome	88.62	88.62
Solyc04g082460.2.1	Tomato	plastid	88.21	88.21
Bra012239.1-P	Field mustard	cytosol	86.38	86.38
CDY31877	Canola	cytosol	86.38	86.38
AT1G20630.1	Thale cress	cytosol	86.18	86.18
CDY01363	Canola	cytosol	86.18	86.18
CDY29518	Canola	cytoskeleton, cytosol, peroxisome	83.94	83.94
Bra025833.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	83.74	83.74
CDY31490	Canola	cytoskeleton, cytosol, peroxisome	83.74	83.74

Protein Annotations

KEGG:00380+1.11.1.6	KEGG:00630+1.11.1.6	MapMan:10.2.1	EntrezGene:100037448	Gene3D:2.40.180.10	EMBL:AB333792
EMBL:ACUP02003382	UniProt:B0M1A4	InterPro:Catalase	InterPro:Catalase_AS	InterPro:Catalase_clade1/3	InterPro:Catalase_core
InterPro:Catalase_core_sf	InterPro:Catalase_haem_BS	InterPro:Catalase_immune_responsive	InterPro:Catalase_sf	EnsemblPlantsGene:GLYMA_06G017900	GO:GO:0003674
GO:GO:0003824	GO:GO:0004096	GO:GO:0004601	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005777	GO:GO:0006950	GO:GO:0006979
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016491	GO:GO:0020037
GO:GO:0042542	GO:GO:0042744	GO:GO:0046872	GO:GO:0055114	GO:GO:0098869	InterPro:IPR018028
InterPro:IPR037060	EnsemblPlants:KRH51611	ProteinID:KRH51611	ProteinID:KRH51611.1	PFAM:PF00199	PFAM:PF06628
PIRSF:PIRSF038928	PRINTS:PR00067	ScanProsite:PS00437	ScanProsite:PS00438	PFscan:PS51402	PANTHER:PTHR11465
PANTHER:PTHR11465:SF34	SMART:SM01060	SUPFAM:SSF56634	UniParc:UPI000165BB59	:	:

Description

hypothetical protein

Coordinates

chr6:-:1351502..1356327

Molecular Weight (calculated)

56738.9 Da

IEP (calculated)

7.265

GRAVY (calculated)

-0.546

Length

492 amino acids

Sequence
(BLAST)

001: MDPYKLRPSS AFNSPFWTTN SGAPVWNNNS SLTVGARGPI LLEDYHLVEK LANFDRERIP ERVVHARGAS AKGFFEVTHD ISHLTCADFL RAPGVQTPVI
101: VRFSTVIHER GSPETLRDPR GFAVKFYTRE GNFDLVGNNL PVFFVRDGMK FPDMVHALKP NPKNHIQENW RILDFFSHFP ESLHMFTFLF DDLGVPQDYR
201: HMDGFGVNTY TLINKAGKAV YVKFHWKTTS GIKCLLEEEA IKVGGANHSH ATQDLHDSIA AGNYPEWKLF VQTIDPEHED KFDFDPLDVT KTWPEDIIPL
301: QPVGRLVLNK NIDNFFAENE QLAFCPAIVV PGVYYSDDKM LQTRIFSYAD SQRHRLGPNY LQLPANAPKC AHHNNHHEGF MNFIHRDEEV NYFPSRYDPV
401: RHAETFPIPP AICSGRREKC GIEKENNFKQ PGERYRSWAP DRQDRFNRRW VDALSDPRVT HEIRSVWISY WSQADRSLGQ KIASRLSMRP NI

Best Arabidopsis Sequence Match ( AT4G35090.1 )
(BLAST)

001: MDPYKYRPAS SYNSPFFTTN SGAPVWNNNS SMTVGPRGPI LLEDYHLVEK LANFDRERIP ERVVHARGAS AKGFFEVTHD ISNLTCADFL RAPGVQTPVI
101: VRFSTVIHER GSPETLRDPR GFAVKFYTRE GNFDLVGNNF PVFFIRDGMK FPDMVHALKP NPKSHIQENW RILDFFSHHP ESLNMFTFLF DDIGIPQDYR
201: HMDGSGVNTY MLINKAGKAH YVKFHWKPTC GVKSLLEEDA IRVGGTNHSH ATQDLYDSIA AGNYPEWKLF IQIIDPADED KFDFDPLDVT KTWPEDILPL
301: QPVGRMVLNK NIDNFFAENE QLAFCPAIIV PGIHYSDDKL LQTRVFSYAD TQRHRLGPNY LQLPVNAPKC AHHNNHHEGF MNFMHRDEEV NYFPSRYDQV
401: RHAEKYPTPP AVCSGKRERC IIEKENNFKE PGERYRTFTP ERQERFIQRW IDALSDPRIT HEIRSIWISY WSQADKSLGQ KLASRLNVRP SI

Arabidopsis Description

CAT2catalase 2 [Source:TAIR;Acc:AT4G35090]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.