Factsheet for Zm00001d018154_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
iPSORT:	plastid
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011676_P001
Zm00001d036168_P001
Zm00001d043726_P001
Zm00001d052338_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23460.1	Zm00001d011676_P001	AT1G60780.1	23543752
AT4G23460.1	Zm00001d036168_P001	AT1G60780.1	23543752
AT4G23460.1	Zm00001d043726_P001	AT1G60780.1	23543752
AT4G23460.1	Zm00001d052338_P001	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030865_P001	Maize	cytosol	14.33	70.83
Zm00001d032260_P001	Maize	plastid	22.47	50.63
KRH29071	Soybean	cytosol, endoplasmic reticulum	33.99	14.67
Bra019302.1-P	Field mustard	cytosol	35.67	14.43
AT4G23460.1	Thale cress	cytosol	35.96	14.33
Zm00001d029196_P002	Maize	cytosol	33.99	14.19
PGSC0003DMT400031784	Potato	cytosol	35.39	14.11
Solyc08g081320.2.1	Tomato	cytosol, extracellular, nucleus, plastid	35.39	14.06
KRH77672	Soybean	endoplasmic reticulum	35.11	14.03
Bra035228.1-P	Field mustard	cytosol	35.39	14.02
AT4G11380.2	Thale cress	cytosol	35.96	13.97
GSMUA_AchrUn_...	Banana	cytosol	35.39	13.97
KRH27813	Soybean	endoplasmic reticulum, nucleus	35.11	13.92
Zm00001d047464_P024	Maize	cytosol, mitochondrion, plastid	35.11	13.92
GSMUA_Achr1P24200_001	Banana	cytosol	35.11	13.86
KRH24097	Soybean	endoplasmic reticulum	34.83	13.81
VIT_02s0025g00100.t01	Wine grape	cytosol	35.67	13.8
Zm00001d044164_P002	Maize	plastid	17.98	7.49
Zm00001d011411_P002	Maize	plastid	17.7	7.29
Zm00001d035093_P002	Maize	plastid	18.26	5.69
CDY71479	Canola	cytosol	3.37	2.78

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	UniProt:A0A1D6HL69	InterPro:AP_beta	ProteinID:AQK75169.1	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Clathrin/coatomer_adapt-like_N	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	InterPro:IPR011989	PFAM:PF01602	PANTHER:PTHR11134
PANTHER:PTHR11134:SF9	SUPFAM:SSF48371	UniParc:UPI0008428483	EnsemblPlantsGene:Zm00001d018154	EnsemblPlants:Zm00001d018154_P001	EnsemblPlants:Zm00001d018154_T001
SEG:seg	:	:	:	:	:

Description

Beta-adaptin-like protein C

Coordinates

chr5:+:215609881..215612833

Molecular Weight (calculated)

40089.5 Da

IEP (calculated)

6.259

GRAVY (calculated)

-0.172

Length

356 amino acids

Sequence
(BLAST)

001: MIQFLYSSTN LCILLYCLQH ELHMGAFKVG NITNENFFEI INGLRPANTA GCSSSTDAPN IPHDGTSVIE LLSDSMNQLS IKNENQLLRV MVGSCWRLSD
101: IQIVYVTPVL LPVEATADPL DKLERKRVIV YSTKLPGPIS LFHRCRMMGA YETDDPKKGD SLCMYSEGRD EPHGEEMLEQ ITDSSLYQHM GSTCQNGGCV
201: REKKDDSCCG PLYLRGDGRF FGDKKEKKSN LGTAGASPPI YNSFMSMKDD IAEVLLEFKE YATEVNVDSV RKAVRAVWRC AIKLERAAKR CISVLLELIK
301: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESRFVKA SMIWIIGEYA ERIDNG

Best Arabidopsis Sequence Match ( AT4G11380.1 )
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSSSPIFEI
201: NSTTLTKLLT ALNECTEWGQ VFILDALSKY KAADPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIS DDSNQLDPSL LDELLTNIST LSSVYHKPPE AFVTRLKTTV QKTEDEDFAE
601: GSEAGYSSSN PVDSAASPPG NIPQPSGRQP APAVPAPVPD LLGDLMGLDN AAIVPVDDPI TQSGPPLPVV VPASSGQGLQ ISAQLSRKDG QVFYSMLFEN
701: NSQSVLDGFM IQFNKNTFGL AAAGSLQIPP LHPATSARTM LPMVLFQNMS AGPPSSLLQV AVKNNQQPVW YFTDKIILHA LFGEDGRMER GTFLETWRSL
801: PDSNEVLKEF PGITITSVES TIELLTAFNM FFIAKRKNGN QDVIYLSAKD PRDVPFLIEL TAMVGQPGLK CAVKTPTPEI APLFFEALEL LFKA

Arabidopsis Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:F4JNZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.