Factsheet for GSMUA_AchrUn_randomP04180_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P25430_001
GSMUA_Achr2P06510_001
GSMUA_Achr7P17600_001
GSMUA_Achr8P31910_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23460.1	GSMUA_Achr1P25430_001	AT1G60780.1	23543752
AT4G23460.1	GSMUA_Achr2P06510_001	AT1G60780.1	23543752
AT4G23460.1	GSMUA_Achr7P17600_001	AT1G60780.1	23543752
AT4G23460.1	GSMUA_Achr8P31910_001	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P24200_001	Banana	cytosol	95.23	95.23
Os03t0355600-01	Rice	plasma membrane	86.14	87.01
EER94839	Sorghum	cytosol	86.36	86.84
Zm00001d047464_P024	Maize	cytosol, mitochondrion, plastid	86.36	86.75
KRH77672	Soybean	endoplasmic reticulum	85.59	86.64
TraesCS4B01G165000.1	Wheat	cytosol, golgi	86.14	86.53
Zm00001d029196_P002	Maize	cytosol	81.71	86.4
HORVU4Hr1G045980.10	Barley	cytosol	86.03	86.32
TraesCS4D01G166700.1	Wheat	cytosol	85.7	86.08
TraesCS4A01G166200.2	Wheat	cytosol	85.81	85.9
KRH27813	Soybean	endoplasmic reticulum, nucleus	85.14	85.52
PGSC0003DMT400031784	Potato	cytosol	84.15	84.99
Solyc08g081320.2.1	Tomato	cytosol, extracellular, nucleus, plastid	84.37	84.93
AT4G23460.1	Thale cress	cytosol	83.81	84.66
KRH29071	Soybean	cytosol, endoplasmic reticulum	77.27	84.48
KRH24097	Soybean	endoplasmic reticulum	84.04	84.41
CDY13257	Canola	cytosol	83.7	83.98
VIT_02s0025g00100.t01	Wine grape	cytosol	85.59	83.91
Bra035228.1-P	Field mustard	cytosol	83.48	83.76
Bra019302.1-P	Field mustard	cytosol	81.71	83.75
Zm00001d030865_P001	Maize	cytosol	6.65	83.33
AT4G11380.2	Thale cress	cytosol	84.59	83.3
CDX94190	Canola	cytosol	82.48	82.67
Zm00001d032260_P001	Maize	plastid	11.97	68.35
CDX86788	Canola	cytosol	83.48	65.19
Zm00001d018154_P001	Maize	extracellular	13.97	35.39
GSMUA_Achr1P13670_001	Banana	cytosol	26.83	28.74
GSMUA_Achr10P...	Banana	cytosol	11.75	23.45
GSMUA_Achr7P15120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	13.53	17.13
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	10.64	13.48

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1150	MapMan:22.1.2.2	MapMan:22.1.3.2	Gene3D:3.30.310.10	InterPro:AP_beta
InterPro:AP_complex_bsu_1_2_4	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig
InterPro:Clathrin_app_Ig-like_sf	InterPro:Clathrin_b-adaptin_app_Ig-like	InterPro:Coatomer/calthrin_app_sub_C	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0030117	GO:GO:0030131	GO:GO:0030276	EnsemblPlantsGene:GSMUA_AchrUn_randomG04180_001	EnsemblPlants:GSMUA_AchrUn_randomP04180_001	EnsemblPlants:GSMUA_AchrUn_randomT04180_001
InterPro:IPR011989	InterPro:IPR012295	InterPro:IPR013037	UniProt:M0U680	PFAM:PF01602	PFAM:PF02883
PFAM:PF09066	PIRSF:PIRSF002291	PANTHER:PTHR11134	PANTHER:PTHR11134:SF3	SMART:SM00809	SMART:SM01020
SUPFAM:SSF48371	SUPFAM:SSF49348	SUPFAM:SSF55711	InterPro:TBP_dom_sf	UniParc:UPI000296E00B	SEG:seg

Description

Beta-adaptin-like protein C [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG04180_001]

Coordinates

chrchrUn_random:-:17919589..17933275

Molecular Weight (calculated)

100150.0 Da

IEP (calculated)

4.739

GRAVY (calculated)

-0.055

Length

902 amino acids

Sequence
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQR CLKDDDPYVR KTAAICVSKL YDINAELVED RGFLETLKDL ISDNNPMVVA NAVAALAEIH ENSSRPIFEI
201: TSHTLSKLLT ALNECTEWGQ VFILDALSRY KASDAREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ETFPEEPALV QLQLLTATVK LFLKKPTEGP
501: QQMIQAVLNN ATMETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIS DDSNQLDPSL LDELLANIAT LSSVYHKIPD AFVSRAKSAT PRPDDDDYAD
601: GGETGYSESP SHAVDGAAAP SGAAAVSPAQ SRQQPPATTA ISAPAPPVPD LLGDLIGLDN AIVPVDQPMT PSEAPLPVLL PSSTGQGLQI SAQLICHDGQ
701: IFYSLLFENN TQLVLDGFMI QFNKNTFGLA AAGPLQVPPL QPEASARTLL PMVLFQNVSP GPPSMLLQVA IKNNQQPVWY FNDKISLHVF FGEDGRMERA
801: NFLETWKSLP ESNEVGKDLS NSIIHSVDAT IEHLTASNVF FVAKRRNADK ELLYLSAKIP RDIPFLIELT AVLGVPGVKC AVKTQSPEMA PLLFEAMETL
901: LK

Best Arabidopsis Sequence Match ( AT4G23460.1 )
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSTSPIFEI
201: NSTILTKLLT ALNECTEWGQ VFILDALSRY KASDPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLDPSL LDELLANIST LSSVYHKPPE AFVTRLKTTV QKTEDEDYVE
601: GSETGYPEAS GNPVDGAASP SATTGYVTKL AAAPAPVPDL LGDLMGSDNA AIVPVDEPTT PSGRPLPVVL PASKGQGLQI SAQLTRQDGQ VFYSMLLENN
701: SQSLLDGFMI QFNKNSFGLA AVGSLQVPPL QPGASARTMM PMVLSQNMST GSTSSVLQVA VKNNQQPVWY FEDKIVLNAL FSEDGRMERG TFLETWKSLP
801: DSNEVQKEFP GITITSVEST LDLLAASNMF FIAKRKNGNQ DVLYLSAKVP RGIPFLIELT AIVGQPGLKC AVKTPTPEIA PLFFEAVEIL FKA

Arabidopsis Description

BETAC-ADBeta-adaptin-like protein C [Source:UniProtKB/Swiss-Prot;Acc:O81742]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.