CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G11380.2	Thale cress	cytosol	94.33	92.58
CDX94190	Canola	cytosol	89.88	89.78
Solyc08g081320.2.1	Tomato	cytosol, extracellular, nucleus, plastid	87.1	87.39
KRH77672	Soybean	endoplasmic reticulum	85.54	86.31
PGSC0003DMT400031784	Potato	cytosol	85.65	86.23
KRH29071	Soybean	cytosol, endoplasmic reticulum	79.09	86.18
KRH24097	Soybean	endoplasmic reticulum	85.65	85.75
CDY71479	Canola	cytosol	40.93	85.38
KRH27813	Soybean	endoplasmic reticulum, nucleus	85.09	85.19
GSMUA_Achr1P24200_001	Banana	cytosol	84.09	83.81
GSMUA_AchrUn_...	Banana	cytosol	83.98	83.7
VIT_02s0025g00100.t01	Wine grape	cytosol	85.32	83.37
CDX86788	Canola	cytosol	99.0	77.06
CDX70642	Canola	cytosol	7.12	30.48
CDX97117	Canola	plastid	26.59	28.38
CDX78425	Canola	plastid	26.03	27.86
CDX70396	Canola	plastid	26.03	27.86
CDY40224	Canola	cytosol, plasma membrane, plastid	23.03	18.96
CDY41227	Canola	cytosol	22.8	18.76

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1150	MapMan:22.1.2.2	MapMan:22.1.3.2	Gene3D:3.30.310.10	GO:A0A078FJS2
UniProt:A0A078FJS2	InterPro:AP_beta	InterPro:AP_complex_bsu_1_2_4	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C
EnsemblPlants:CDY13257	ProteinID:CDY13257	ProteinID:CDY13257.1	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf
InterPro:Clathrin_b-adaptin_app_Ig-like	InterPro:Coatomer/calthrin_app_sub_C	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117
GO:GO:0030131	GO:GO:0030276	EnsemblPlantsGene:GSBRNA2T00071199001	InterPro:IPR011989	InterPro:IPR012295	InterPro:IPR013037
PFAM:PF01602	PFAM:PF02883	PFAM:PF09066	PIRSF:PIRSF002291	PANTHER:PTHR11134	PANTHER:PTHR11134:SF3
SMART:SM00809	SMART:SM01020	SUPFAM:SSF48371	SUPFAM:SSF49348	SUPFAM:SSF55711	InterPro:TBP_dom_sf
UniParc:UPI0004EE609E	SEG:seg	:	:	:	:

Description

BnaC09g23990DBeta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJS2]

Coordinates

chrLK032033:+:264743..270020

Molecular Weight (calculated)

99755.7 Da

IEP (calculated)

4.657

GRAVY (calculated)

-0.045

Length

899 amino acids

Sequence
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL YDINAELVED RGFLDALKDL ISDNNPMVVA NAVAALAEIQ ENSTSPIFEI
201: NSTTLTKLLT ALNECTEWGQ VFILDALSRY KAADPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RRAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ESFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLEPSL LDELLTNIST LSSVYHKPPE AFVTRLKTTV QKTEDEDFAE
601: GSEAGYSSGN PADSAASPPV TMGNVAHPAG RQPAPVPAAP APVPDLLGDL MGLDNAAIVP VDEPTTPSGP PLPVVVPAST GQGLQISAQL ARRDGQVFYS
701: MLFENNTQAV LDGFMIQFNK NTFGLAAAGP LQIAPLQPGT SARTLLPMVL LQNLSTGPPS SLLQVAVKNN QQPVWYFNDK IILHALFSED GRMERGTFLE
801: TWRSLPDSNE VQREFPGITI TSVESTIDLL TAYNMFFIAK RKNGNQEVIY LSAKVPVDVP LLIELTAMVG QPGLKCALKT PTPEIAPIFF EAVELLFKA

Best Arabidopsis Sequence Match ( AT4G11380.1 )
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSSSPIFEI
201: NSTTLTKLLT ALNECTEWGQ VFILDALSKY KAADPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIS DDSNQLDPSL LDELLTNIST LSSVYHKPPE AFVTRLKTTV QKTEDEDFAE
601: GSEAGYSSSN PVDSAASPPG NIPQPSGRQP APAVPAPVPD LLGDLMGLDN AAIVPVDDPI TQSGPPLPVV VPASSGQGLQ ISAQLSRKDG QVFYSMLFEN
701: NSQSVLDGFM IQFNKNTFGL AAAGSLQIPP LHPATSARTM LPMVLFQNMS AGPPSSLLQV AVKNNQQPVW YFTDKIILHA LFGEDGRMER GTFLETWRSL
801: PDSNEVLKEF PGITITSVES TIELLTAFNM FFIAKRKNGN QDVIYLSAKD PRDVPFLIEL TAMVGQPGLK CAVKTPTPEI APLFFEALEL LFKA

Arabidopsis Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:F4JNZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.