CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035228.1-P	Field mustard	cytosol	77.49	99.56
CDY13257	Canola	cytosol	77.06	99.0
AT4G11380.2	Thale cress	cytosol	73.51	92.69
CDX94190	Canola	cytosol	69.87	89.67
Solyc08g081320.2.1	Tomato	cytosol, extracellular, nucleus, plastid	67.53	87.05
KRH29071	Soybean	cytosol, endoplasmic reticulum	61.82	86.55
KRH77672	Soybean	endoplasmic reticulum	66.67	86.42
PGSC0003DMT400031784	Potato	cytosol	66.49	86.0
KRH24097	Soybean	endoplasmic reticulum	66.75	85.86
KRH27813	Soybean	endoplasmic reticulum, nucleus	66.23	85.19
CDY71479	Canola	cytosol	31.77	85.15
GSMUA_Achr1P24200_001	Banana	cytosol	65.45	83.81
GSMUA_AchrUn_...	Banana	cytosol	65.19	83.48
VIT_02s0025g00100.t01	Wine grape	cytosol	66.41	83.37
CDX70642	Canola	cytosol	5.54	30.48
CDX97117	Canola	plastid	20.78	28.5
CDX78425	Canola	plastid	20.35	27.98
CDX70396	Canola	plastid	20.35	27.98
CDY40224	Canola	cytosol, plasma membrane, plastid	18.01	19.05
CDY41227	Canola	cytosol	18.01	19.03

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1150	MapMan:22.1.2.2	MapMan:22.1.3.2	Gene3D:3.30.310.10	GO:A0A078DHH7
InterPro:AP_beta	InterPro:AP_complex_bsu_1_2_4	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C	EnsemblPlants:CDX86788
ProteinID:CDX86788	ProteinID:CDX86788.1	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:Clathrin_b-adaptin_app_Ig-like
InterPro:Coatomer/calthrin_app_sub_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030131	GO:GO:0030276	EnsemblPlantsGene:GSBRNA2T00145522001
InterPro:IPR011989	InterPro:IPR012295	InterPro:IPR013037	PFAM:PF01602	PFAM:PF02883	PFAM:PF09066
PIRSF:PIRSF002291	PANTHER:PTHR11134	PANTHER:PTHR11134:SF3	SMART:SM00809	SMART:SM01020	SUPFAM:SSF48371
SUPFAM:SSF49348	SUPFAM:SSF55711	InterPro:TBP_dom_sf	UniParc:UPI0004EE3148	SEG:seg	:

Description

BnaA09g21780D

Coordinates

chrLK031847:-:718036..723987

Molecular Weight (calculated)

127083.0 Da

IEP (calculated)

4.478

GRAVY (calculated)

-0.043

Length

1155 amino acids

Sequence
(BLAST)

0001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKV LSSDLTLCLY FWDLYVSNLV VTLTELRFDK RKDAVKKVIA AMTVGKDVSS LFTDVVNCMQ TENLELKKLV
0101: YLYLINYAKS QPDLAILAVN TFVKDSQDPN PLIRALAVRT MGCIRVDKIT EYLCDPLQKC LKDDDPYVRK TAAICVAKLY DINAELVEDR GFLDALKDLI
0201: SDNNPMVVAN AVAALAEIQE NSTSAIFEIN STTLTKLLTA LNECTEWGQV FILDALSRYK AADPREAENI VERVTPRLQH ANCAVVLSAV KMILQQMELI
0301: TSTDVIRNLC KKMAPPLVTL LSAEPEIQYV ALRNINLIVQ KRPTILAHEI KVFFCKYNDP IYVKMEKLEI MIKLASDRNI DQVLLEFKEY ATEVDVDFVR
0401: RAVRAIGRCA IKLERAAERC ISVLLELIKI KVNYVVQEAI IVIKDIFRRY PNTYESIIAT LCESLDTLDE PEAKASMIWI IGEYAERIDN ADELLESFLE
0501: SFPEEPAQVQ LQLLTATVKL FLKKPTEGPQ QMIQVVLNNA TVETDNPDLR DRAYIYWRLL STDPEAAKDV VLAEKPVITD DSNQLEPSLL DELLTNISTL
0601: SSVYHKPPEA FVTRLKTTVQ KTEDEDFAEG SEAGYSSGNP ADSAASPPVT MGNVAHPAGR QTAPAPAAPA PVPDLLGDLM GLDNAAIVPV DEPTTPSGPP
0701: LPVVVPASTG QGLQISAQLA RRDGQVFYSM LFENNTQAVL DGFMIQFNKN TFGLAAAGPL QVVLNNATVE TDNPDLRDRA YIYWRLLSTD PEAAKDVVLA
0801: EKPVITDDSN QLEPSLLDEL LTNISTLSSV YHKPPEAFVT RLKTTVQKTE DEDFAEGSEA GYSSGNPADS AASPPVTMGN VAHPAGRQPA PVPAAPAPVP
0901: DLLGDLMGLD NAAIVPVDEP TTPSGPPLPV VVPASTGQGL QISAQLARRD GQVFYSMLFE NNTQAVLDGF MIQFNKNTFG LAAAGPLQIA PLQPGTSART
1001: LLPMVLLQNL STGPPSSLLQ VAVKNNQQPV WYFNDKIILH ALFSEDGRME RGTFLETWRS LPDSNEVQRE FPGITITSVE STIDLLTAYN MFFIAKRKNG
1101: NQDVIYLSAK VPVDVPLLIE LTAVVGQPGL KCALKTPTPE IAPIFFEAVE LLFKA

Best Arabidopsis Sequence Match ( AT4G11380.2 )
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKC DDSVHFSVTD WDIVTLVKLR LDKRKDAVKK VIAAMTVGKD VSSLFTDVVN CMQTENLELK KLVYLYLINY
101: AKSQPDLAIL AVNTFVKDSQ DPNPLIRALA VRTMGCIRVD KITEYLCDPL QKCLKDDDPY VRKTAAICVA KLFDINAELV EDRGFLEALK DLISDNNPMV
201: VANAVAALAE IQENSSSPIF EINSTTLTKL LTALNECTEW GQVFILDALS KYKAADPREA ENIVERVTPR LQHANCAVVL SAVKMILQQM ELITSTDVIR
301: NLCKKMAPPL VTLLSAEPEI QYVALRNINL IVQKRPTILA HEIKVFFCKY NDPIYVKMEK LEIMIKLASD RNIDQVLLEF KEYATEVDVD FVRKAVRAIG
401: RCAIKLERAA ERCISVLLEL IKIKVNYVVQ EAIIVIKDIF RRYPNTYESI IATLCESLDT LDEPEAKASM IWIIGEYAER IDNADELLES FLENFPEEPA
501: QVQLQLLTAT VKLFLKKPTE GPQQMIQVVL NNATVETDNP DLRDRAYIYW RLLSTDPEAA KDVVLAEKPV ISDDSNQLDP SLLDELLTNI STLSSVYHKP
601: PEAFVTRLKT TVQKTEDEDF AEGSEAGYSS SNPVDSAASP PGNIPQPSGR QPAPAVPAPV PDLLGDLMGL DNAAIVPVDD PITQSGPPLP VVVPASSGQG
701: LQISAQLSRK DGQVFYSMLF ENNSQSVLDG FMIQFNKNTF GLAAAGSLQI PPLHPATSAR TMLPMVLFQN MSAGPPSSLL QVAVKNNQQP VWYFTDKIIL
801: HALFGEDGRM ERGTFLETWR SLPDSNEVLK EFPGITITSV ESTIELLTAF NMFFIAKRKN GNQDVIYLSA KDPRDVPFLI ELTAMVGQPG LKCAVKTPTP
901: EIAPLFFEAL ELLFKA

Arabidopsis Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:F4JNZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.