Factsheet for PGSC0003DMT400031784

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002906

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23460.1	PGSC0003DMT400002906	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g081320.2.1	Tomato	cytosol, extracellular, nucleus, plastid	96.53	96.21
KRH77672	Soybean	endoplasmic reticulum	87.01	87.21
KRH29071	Soybean	cytosol, endoplasmic reticulum	80.29	86.91
KRH24097	Soybean	endoplasmic reticulum	86.79	86.3
Bra019302.1-P	Field mustard	cytosol	84.88	86.14
AT4G23460.1	Thale cress	cytosol	86.0	86.0
KRH27813	Soybean	endoplasmic reticulum, nucleus	86.45	85.97
CDY13257	Canola	cytosol	86.23	85.65
Bra035228.1-P	Field mustard	cytosol	86.11	85.54
GSMUA_Achr1P24200_001	Banana	cytosol	85.55	84.7
VIT_02s0025g00100.t01	Wine grape	cytosol	87.23	84.67
CDX94190	Canola	cytosol	85.22	84.56
Os03t0355600-01	Rice	plasma membrane	84.43	84.43
EER94839	Sorghum	cytosol	84.66	84.28
GSMUA_AchrUn_...	Banana	cytosol	84.99	84.15
TraesCS4A01G166200.2	Wheat	cytosol	84.77	84.02
Zm00001d047464_P024	Maize	cytosol, mitochondrion, plastid	84.43	83.96
TraesCS4D01G166700.1	Wheat	cytosol	84.43	83.96
TraesCS4B01G165000.1	Wheat	cytosol, golgi	84.43	83.96
HORVU4Hr1G045980.10	Barley	cytosol	84.43	83.87
Zm00001d029196_P002	Maize	cytosol	80.07	83.82
AT4G11380.2	Thale cress	cytosol	85.89	83.73
Zm00001d030865_P001	Maize	cytosol	6.72	83.33
Zm00001d032260_P001	Maize	plastid	12.09	68.35
CDX86788	Canola	cytosol	86.0	66.49
Zm00001d018154_P001	Maize	extracellular	14.11	35.39
PGSC0003DMT400037585	Potato	cytosol	27.77	29.52
PGSC0003DMT400076344	Potato	cytosol	9.74	13.62

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102590622	Gene3D:2.60.40.1150	MapMan:22.1.2.2	MapMan:22.1.3.2	Gene3D:3.30.310.10
InterPro:AP_beta	InterPro:AP_complex_bsu_1_2_4	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C	InterPro:Clathrin/coatomer_adapt-like_N
InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:Clathrin_b-adaptin_app_Ig-like	InterPro:Coatomer/calthrin_app_sub_C	ncoils:Coil	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030131	GO:GO:0030276	InterPro:IPR011989
InterPro:IPR012295	InterPro:IPR013037	UniProt:M1AW83	PFAM:PF01602	PFAM:PF02883	PFAM:PF09066
EnsemblPlantsGene:PGSC0003DMG400012194	PGSC:PGSC0003DMG400012194	EnsemblPlants:PGSC0003DMT400031784	PIRSF:PIRSF002291	PANTHER:PTHR11134	PANTHER:PTHR11134:SF3
SMART:SM00809	SMART:SM01020	SUPFAM:SSF48371	SUPFAM:SSF49348	SUPFAM:SSF55711	InterPro:TBP_dom_sf
UniParc:UPI0002964F6A	RefSeq:XP_006343954.1	SEG:seg	:	:	:

Description

AP-2 complex subunit beta-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400012194]

Coordinates

chr8:-:55024010..55032418

Molecular Weight (calculated)

99314.8 Da

IEP (calculated)

4.785

GRAVY (calculated)

-0.090

Length

893 amino acids

Sequence
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQR CLKDDDPYVR KTAAICVAKL YDINAELVED RGFLDALKDL ISDNNPMVVA NAVAALAEIQ ESSSKPIFEI
201: TSHTLSKLLT ALNECTEWGQ VFILDALSKY KAADAREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVVRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ESFPEEPPQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIS DDSNQLDPSL LDELLSNIAT LSSVYHKPPE AFVTRVKTTQ KTEEEEYPDA
601: GEQSYSDSPA RVAESGASPP ASTANPAARQ PAAPAALPDL LDLGMDNSGS AIVSVDQPAT PAGPPLPIVL PASSGQGLQI SAQLIRRDGQ VFYSMMFENN
701: SQVPLDGFMI QFNKNTFGLA ASGQLQVPQL LPGTSASTLL PMVLFQNISP GPANTLLQVA IKNNQQPVWY FNDKIYFHVL FTEDGRMERS TFLETWKSLP
801: DSNEVSRDFP ASVINSVETT LDRLAASNMF FIAKRKHANQ EVLYLSAKSP RGIPFLIELT AVIGTPGVKC AIKTPSPEMA PLFFEAVETL LKS

Best Arabidopsis Sequence Match ( AT4G23460.1 )
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSTSPIFEI
201: NSTILTKLLT ALNECTEWGQ VFILDALSRY KASDPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLDPSL LDELLANIST LSSVYHKPPE AFVTRLKTTV QKTEDEDYVE
601: GSETGYPEAS GNPVDGAASP SATTGYVTKL AAAPAPVPDL LGDLMGSDNA AIVPVDEPTT PSGRPLPVVL PASKGQGLQI SAQLTRQDGQ VFYSMLLENN
701: SQSLLDGFMI QFNKNSFGLA AVGSLQVPPL QPGASARTMM PMVLSQNMST GSTSSVLQVA VKNNQQPVWY FEDKIVLNAL FSEDGRMERG TFLETWKSLP
801: DSNEVQKEFP GITITSVEST LDLLAASNMF FIAKRKNGNQ DVLYLSAKVP RGIPFLIELT AIVGQPGLKC AVKTPTPEIA PLFFEAVEIL FKA

Arabidopsis Description

BETAC-ADBeta-adaptin-like protein C [Source:UniProtKB/Swiss-Prot;Acc:O81742]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.