Factsheet for Zm00001d029196_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011676_P001
Zm00001d036168_P001
Zm00001d043726_P001
Zm00001d052338_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23460.1	Zm00001d011676_P001	AT1G60780.1	23543752
AT4G23460.1	Zm00001d036168_P001	AT1G60780.1	23543752
AT4G23460.1	Zm00001d043726_P001	AT1G60780.1	23543752
AT4G23460.1	Zm00001d052338_P001	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94839	Sorghum	cytosol	98.83	93.98
Zm00001d047464_P024	Maize	cytosol, mitochondrion, plastid	98.24	93.32
Os03t0355600-01	Rice	plasma membrane	94.72	90.48
TraesCS4D01G166700.1	Wheat	cytosol	92.97	88.31
TraesCS4B01G165000.1	Wheat	cytosol, golgi	92.97	88.31
HORVU4Hr1G045980.10	Barley	cytosol	92.61	87.88
TraesCS4A01G166200.2	Wheat	cytosol	92.61	87.68
Zm00001d030865_P001	Maize	cytosol	7.03	83.33
GSMUA_Achr1P24200_001	Banana	cytosol	86.99	82.26
GSMUA_AchrUn_...	Banana	cytosol	86.4	81.71
KRH77672	Soybean	endoplasmic reticulum	84.53	80.92
PGSC0003DMT400031784	Potato	cytosol	83.82	80.07
KRH27813	Soybean	endoplasmic reticulum, nucleus	83.82	79.62
Solyc08g081320.2.1	Tomato	cytosol, extracellular, nucleus, plastid	83.47	79.46
Bra019302.1-P	Field mustard	cytosol	81.95	79.43
AT4G23460.1	Thale cress	cytosol	82.88	79.17
Bra035228.1-P	Field mustard	cytosol	82.65	78.42
KRH24097	Soybean	endoplasmic reticulum	82.53	78.4
KRH29071	Soybean	cytosol, endoplasmic reticulum	75.26	77.82
AT4G11380.2	Thale cress	cytosol	83.0	77.29
VIT_02s0025g00100.t01	Wine grape	cytosol	83.35	77.28
Zm00001d032260_P001	Maize	plastid	12.66	68.35
Zm00001d018154_P001	Maize	extracellular	14.19	33.99
Zm00001d044164_P002	Maize	plastid	25.67	25.64
Zm00001d011411_P002	Maize	plastid	25.67	25.35
Zm00001d035093_P002	Maize	plastid	24.97	18.65

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1150	MapMan:22.1.2.2	MapMan:22.1.3.2	Gene3D:3.30.310.10	UniProt:A0A1D6K3D9
InterPro:AP_beta	InterPro:AP_complex_bsu_1_2_4	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C	InterPro:Clathrin/coatomer_adapt-like_N
InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:Clathrin_b-adaptin_app_Ig-like	InterPro:Coatomer/calthrin_app_sub_C	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	GO:GO:0030131	GO:GO:0030276	InterPro:IPR011989	InterPro:IPR012295
InterPro:IPR013037	ProteinID:ONL98162.1	PFAM:PF01602	PFAM:PF02883	PFAM:PF09066	PIRSF:PIRSF002291
PANTHER:PTHR11134	PANTHER:PTHR11134:SF3	SMART:SM00809	SMART:SM01020	SUPFAM:SSF48371	SUPFAM:SSF49348
SUPFAM:SSF55711	InterPro:TBP_dom_sf	UniParc:UPI00084289A9	EnsemblPlantsGene:Zm00001d029196	EnsemblPlants:Zm00001d029196_P002	EnsemblPlants:Zm00001d029196_T002
SEG:seg	:	:	:	:	:

Description

Beta-adaptin-like protein C

Coordinates

chr1:-:61784029..61789296

Molecular Weight (calculated)

94440.0 Da

IEP (calculated)

4.542

GRAVY (calculated)

-0.005

Length

853 amino acids

Sequence
(BLAST)

001: MTVGKDVSSL FTDVVNCMQT ENLELKKLVY LYLINYAKSQ PDLAILAVNT FVKDSQDPNP LIRALAVRTM GCIRVDKITE YLCDPLQRCL KDDDPYVRKT
101: AAICVAKLYD INAELVEDRG FLEALKDLIS DNNPMVVANA VAALAEIQDS SVQPIFEITS HTLSKLLTAL NECTEWGQVF ILDSLSRYKA ADAREAENIV
201: ERVTPRLQHA NCAVVLSAVK IILLQMELIT STDVVRNLCK KMAPPLVTLL SAEPEIQYVA LRNINLIVQK RPTILAHEIK VFFCKYNDPI YVKMEKLEIM
301: IKLASDRNID QVLLEFKEYA TEVDVDFVRK AVRAIGRCAI KLERAAERCI SVLLELIKIK VNYVVQEAII VIKDIFRRYP NTYESIIATL CESLDTLDEP
401: EAKASMIWII GEYAERIDNA DELLESFLET FPEEPALVQL QLLTATVKLF LKKPTEGPQQ MIQAVLNNAT VETDNPDLRD RAYIYWRLLS TDPEAAKDVV
501: LAEKPVISDD SNQLDSSLLD ELLANISTLS SVYHKPPESF VSRVKAAPRA DDEEFADTAE TGYSESPSQG VDGASPSSSA GTSSNVPVKQ LAVASPPAMP
601: DLLGDLMGID NAIVPVDEPA APSGPPLPVL LPSTTGQGLQ ISAQLTRRDG QIYYDISFEN GTQGVLDGFM IQFNKNTFGL AAGEALQVTP LQPGQSTRTL
701: LQMTPFQNIS PGAPNSLLQV AVKNNQQPVW YFNDKIPLHV FFGEDGKMER AGFLEAWKSL PDDNEFTKEF PGSVISSIDA TVERLVASNV FFIAKRKNAN
801: MDVLYLSAKM PRGIPFLIEV TAVVGVPGVK CAVKTPNREM VPLFFEAMEA LTK

Best Arabidopsis Sequence Match ( AT4G23460.1 )
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSTSPIFEI
201: NSTILTKLLT ALNECTEWGQ VFILDALSRY KASDPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLDPSL LDELLANIST LSSVYHKPPE AFVTRLKTTV QKTEDEDYVE
601: GSETGYPEAS GNPVDGAASP SATTGYVTKL AAAPAPVPDL LGDLMGSDNA AIVPVDEPTT PSGRPLPVVL PASKGQGLQI SAQLTRQDGQ VFYSMLLENN
701: SQSLLDGFMI QFNKNSFGLA AVGSLQVPPL QPGASARTMM PMVLSQNMST GSTSSVLQVA VKNNQQPVWY FEDKIVLNAL FSEDGRMERG TFLETWKSLP
801: DSNEVQKEFP GITITSVEST LDLLAASNMF FIAKRKNGNQ DVLYLSAKVP RGIPFLIELT AIVGQPGLKC AVKTPTPEIA PLFFEAVEIL FKA

Arabidopsis Description

BETAC-ADBeta-adaptin-like protein C [Source:UniProtKB/Swiss-Prot;Acc:O81742]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.