Factsheet for Zm00001d044164_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01104	Sorghum	plastid	95.78	96.8
Zm00001d011411_P002	Maize	plastid	92.86	91.78
TraesCS3A01G228800.1	Wheat	plastid	87.12	88.47
TraesCS3D01G226500.1	Wheat	plastid	86.65	87.99
TraesCS3B01G255800.2	Wheat	plastid	86.65	87.99
Os01t0626100-01	Rice	plasma membrane	21.19	87.86
HORVU3Hr1G055990.1	Barley	cytosol, plastid	86.53	85.14
GSMUA_Achr1P13670_001	Banana	cytosol	76.11	77.2
KRH62012	Soybean	plastid	73.42	74.2
KRH52665	Soybean	plastid	72.83	73.61
VIT_04s0008g03880.t01	Wine grape	cytosol, plastid	71.43	72.27
Bra006100.1-P	Field mustard	plastid	69.44	70.6
CDX70396	Canola	plastid	69.44	70.6
CDX78425	Canola	plastid	69.44	70.6
PGSC0003DMT400037585	Potato	cytosol	69.32	70.48
Solyc08g068210.2.1	Tomato	plastid	69.09	70.24
CDX97117	Canola	plastid	68.5	69.48
AT5G11490.2	Thale cress	cytosol, plastid	68.15	68.47
CDX70642	Canola	cytosol	16.51	67.14
VIT_00s0153g00080.t01	Wine grape	cytosol	10.66	62.76
Os01t0626200-01	Rice	cytosol	3.63	58.49
Zm00001d030865_P001	Maize	cytosol	2.81	33.33
Zm00001d047464_P024	Maize	cytosol, mitochondrion, plastid	27.05	25.72
Zm00001d029196_P002	Maize	cytosol	25.64	25.67
Zm00001d032260_P001	Maize	plastid	4.33	23.42
Zm00001d018154_P001	Maize	extracellular	7.49	17.98
Zm00001d035093_P002	Maize	plastid	19.44	14.54

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:101027221	MapMan:22.5.2.2.2	Gene3D:3.30.310.10	UniProt:A0A1D6NI64	InterPro:AP_beta
InterPro:AP_complex_bsu_1_2_4	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C	InterPro:Clathrin/coatomer_adapt-like_N	ncoils:Coil
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030131	GO:GO:0030276
InterPro:IPR011989	InterPro:IPR012295	ProteinID:ONM40069.1	PFAM:PF01602	PFAM:PF09066	PIRSF:PIRSF002291
PANTHER:PTHR11134	PANTHER:PTHR11134:SF26	SMART:SM01020	SUPFAM:SSF48371	InterPro:TBP_dom_sf	UniParc:UPI0008439AE5
EnsemblPlantsGene:Zm00001d044164	EnsemblPlants:Zm00001d044164_P002	EnsemblPlants:Zm00001d044164_T002	SEG:seg	:	:

Description

Beta-adaptin-like protein A

Coordinates

chr3:-:220843094..220855486

Molecular Weight (calculated)

94031.0 Da

IEP (calculated)

5.138

GRAVY (calculated)

-0.137

Length

854 amino acids

Sequence
(BLAST)

001: MAPTVPSAAK SASPSQPSGK SEVTDLKQQL RQLAGSRAPD ADAQRRDVFK RVISCMTAGI DVSAAFGEMV LCSATSDVVT KKMCYLYVGA HARAHPDLAL
101: LTINFLQRDC QDQDPTIRGL ALRSLCSLRV PNLVEYLVTP LTTGLKDPSA YVRMIAAVGA AKLYHISATA CIDADLPASL KALMLSDPDA QVKYPATNWP
201: VVANCLHALQ EIWALEAAKS EAAAREIETL HSKPVVFYLL NKIKEFSEWA QCIVLELASK FLPSDNNEIF DIMNLLEDRL QHANGAVVLA TIKVFLHLTM
301: SMTDVHQQVY ERIKAPLLTL VGAGSPEQSY SVLCHLHLLV MRAPMLFSSD YKSFYCQFSD PSYVKKLKLE MLTAIANESN TYEIVTELCE YAGNVDVPIA
401: RESIRAVGKI ALQQYDVNAI VDRLLQFLEM DKDYVTAETL VLVKDLLRKY PQWSHDCIAV VGNISSKNIQ EPKGKAALIW MLGEYSQDMH DAPYILENLV
501: ENWDEEHSPE VRLHLLTAVM KCFFKRPPET QKALGATLSA GLSDTQQDVH DRALFYYRLL QYNPNVAERV VNPPKQAVSV FADTQSSETK DRIFDEFNSL
601: SVVYQKPSYM FTDREHREPF EYSEDLTSLT VGAEDPENVI SAQRYQENDN DLLLSTSDKE DNGTRASNGS STSAYNAPSD LISPSLISSQ TPAETSLVNT
701: GGPTHSSQSN FSLDDLLGIG VTEAPAPTPP ALTLNSKPVL DPGTFQRKWG QLALALSQEC SLSPQGAASL MNPQSLIRHM QSNYIQCIAS GGQPPNYKFF
801: FYAQKDGATA FFLVECIVNT ASAKAQLKIK ADDGTAAEAF STLFQSALSK FGLS

Best Arabidopsis Sequence Match ( AT5G11490.1 )
(BLAST)

001: MAPPAASQRY PSPSQPSGKS EVSDLKTQLR QLAGSRAPGV DDSKRDLYKK VISYMTIGID VSSVFGEMVM CSATSDIVLK KMCYLYVGNY AKGNPDLSLL
101: TINFLQRDCK DEDPMIRGLA LRSLCSLRVP NLVEYLVGPL GSGLKDNNSY VRTIAVTGVL KLYHISPSTC IDADFPATLK SLMLHDSDAQ VVANCLSALQ
201: EIWSLEASHS EEACREKESL LSKPVIYYFL NRIKEFNEWA QCLILELAVK YVPSDSNDIF DIMNLLEDRL QHANGAVVLA TVKVFLQLTL SMTDVHQQVY
301: ERIKSPLLTL VSSGSPEQSY AILSHLHLLV VRAPFIFAAD YKHFYCQYNE PSYVKKLKLE MLTAVANESN TYEIVTELCE YAANVDIAIA RESIRAVGKI
401: ALQQYDVNAI VDRLLQFLEM EKDYVTAETL VLVKDLLRKY PQWSHDCISV VGGISSKNIQ EPKAKAALIW MLGEYAQDMS DAPYVLENLI ENWEEEHSAE
501: VRLHLLTAAM KCFFKRAPET QKALGTALAA GIADFHQDVH DRALFYYRVL QYDVHVAERV VSPPKQAVSV FADTQSSEIK DRVFDEFNSL SVIYQKPSYM
601: FTDKEHRGPF EFSDEVGNIS ITPEASSDIV PAQQYEANDK DLLLGIDEKD ENKGVSNNNG SAYTAPSLES SSNITSQMQE LAISGPATSA TTPQSFGFDD
701: LFGLGLSTAP APTPSPPLLK LNARAALDPG AFQQKWRQLP ISLTQECSVN PQGIAALTVP QSLIKHMQSH SIHCIASGGQ SPNFKFFFFA QKESEPSNYL
801: TECIINTSSA KAQIKVKADE QSTCQAFTTV FETALSKFGM P

Arabidopsis Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:F4JXV9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.