Factsheet for Solyc08g068210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037585	Potato	cytosol	94.64	94.64
VIT_04s0008g03880.t01	Wine grape	cytosol, plastid	81.79	81.4
KRH52665	Soybean	plastid	80.71	80.24
KRH62012	Soybean	plastid	80.24	79.76
CDX97117	Canola	plastid	77.38	77.2
Bra006100.1-P	Field mustard	plastid	76.79	76.79
CDX78425	Canola	plastid	76.79	76.79
CDX70396	Canola	plastid	76.67	76.67
AT5G11490.2	Thale cress	cytosol, plastid	77.02	76.12
GSMUA_Achr1P13670_001	Banana	cytosol	75.95	75.77
CDX70642	Canola	cytosol	17.98	71.9
VIT_00s0153g00080.t01	Wine grape	cytosol	12.26	71.03
EES01104	Sorghum	plastid	71.19	70.77
TraesCS3D01G226500.1	Wheat	plastid	70.6	70.51
TraesCS3A01G228800.1	Wheat	plastid	70.6	70.51
TraesCS3B01G255800.2	Wheat	plastid	70.48	70.39
Zm00001d044164_P002	Maize	plastid	70.24	69.09
Zm00001d011411_P002	Maize	plastid	70.36	68.4
HORVU3Hr1G055990.1	Barley	cytosol, plastid	70.12	67.86
Os01t0626100-01	Rice	plasma membrane	16.31	66.5
Os01t0626200-01	Rice	cytosol	2.98	47.17
Solyc08g081320.2.1	Tomato	cytosol, extracellular, nucleus, plastid	29.76	27.9
Solyc06g043030.2.1	Tomato	cytosol, peroxisome, plastid	19.17	14.15

Protein Annotations

Gene3D:1.25.10.10	MapMan:22.5.2.2.2	Gene3D:3.30.310.10	InterPro:AP_beta	InterPro:AP_complex_bsu_1_2_4	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C	InterPro:Clathrin/coatomer_adapt-like_N	UniProt:G8Z247	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	GO:GO:0030124	GO:GO:0030131	GO:GO:0030276	EMBL:GQ261225
InterPro:IPR011989	InterPro:IPR012295	PFAM:PF01602	PFAM:PF09066	PIRSF:PIRSF002291	PANTHER:PTHR11134
PANTHER:PTHR11134:SF26	SMART:SM01020	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc08g068210.2	EnsemblPlants:Solyc08g068210.2.1	InterPro:TBP_dom_sf
UniParc:UPI000243C627	SEG:seg	:	:	:	:

Description

Beta-adaptin-like protein A [Source:Projected from Arabidopsis thaliana (AT5G11490) UniProtKB/Swiss-Prot;Acc:Q9LDK9]

Coordinates

chr8:+:57312956..57328763

Molecular Weight (calculated)

93404.7 Da

IEP (calculated)

5.289

GRAVY (calculated)

-0.140

Length

840 amino acids

Sequence
(BLAST)

001: MAPPAQTHRS PSPSQPSGKG EVSDLKMQLR QLAGSRAPGT DDAKRELFKK VISCMTIGID VSSVFSEMVM CSATSDIVLK KMCYLYVGNY AKHNPDLALL
101: TINFLQRDCK DEDPMIRGLA LRSLCSLRVT NLVEYLVDPL GAGLKDSNSY VRTVAAMGVL KLYHISESTC MDADFPATLK HLMLNDREAQ VVANCLCALQ
201: EIWGLEATKS EEASTERESL LSKPLIYYLL NRFKEFSEWA QCAILDLVSK YVPSDSNEIF DMMNLLEDRL QHANGAVVLA TIKLFLQLTL SMADIHQQVY
301: ERIKAPLLTL VSSGGPEQSY AVLSHLHLLV MRAPYIFSAD YKHFYCQYNE PFYVKKLKLE MLTAVANESN TYEIVTELCE YAANVDIPMA RESIRAVGKI
401: ALQQYDVNAI VDRLLQFLEM EKDHVTAETL VLVKDLLRKY PQWSHDCIAV VGNISSKNVQ EPKAKAALIW MLGEYAQDMQ DAPYILESLI ENWEEEHSAE
501: VRLHLLTAVV KCFFRRPPET QKALGAALAA GVNDFHQDVH DRALLYYRLL QYNVSIAERV VNPPKQAVSV FADTQSNEIK DRIFDEFNSL SVVYQKPSYM
601: FTDKEHRGPF AFSEEIGNLS LGEESTDNVA PAQRIEANDK DLLLSTSDKE ESKGSIHNSS AYSAPGYDGS LAALSQTDLV SLDYKPTPNV PSATFAIDDL
701: LGLGLPAAAS PPAPPPVLKL NTKAALEPNA FQQKWRQLPI SLSQETSISP EGVATLISPQ TLIHHMQGHS IHCIASGGQA PNFKFFFYAQ KAEEPSTYLV
801: ECVVNSSSCK VQLKVKADDQ STSQAFSELF QSALSKFGFS

Best Arabidopsis Sequence Match ( AT5G11490.1 )
(BLAST)

001: MAPPAASQRY PSPSQPSGKS EVSDLKTQLR QLAGSRAPGV DDSKRDLYKK VISYMTIGID VSSVFGEMVM CSATSDIVLK KMCYLYVGNY AKGNPDLSLL
101: TINFLQRDCK DEDPMIRGLA LRSLCSLRVP NLVEYLVGPL GSGLKDNNSY VRTIAVTGVL KLYHISPSTC IDADFPATLK SLMLHDSDAQ VVANCLSALQ
201: EIWSLEASHS EEACREKESL LSKPVIYYFL NRIKEFNEWA QCLILELAVK YVPSDSNDIF DIMNLLEDRL QHANGAVVLA TVKVFLQLTL SMTDVHQQVY
301: ERIKSPLLTL VSSGSPEQSY AILSHLHLLV VRAPFIFAAD YKHFYCQYNE PSYVKKLKLE MLTAVANESN TYEIVTELCE YAANVDIAIA RESIRAVGKI
401: ALQQYDVNAI VDRLLQFLEM EKDYVTAETL VLVKDLLRKY PQWSHDCISV VGGISSKNIQ EPKAKAALIW MLGEYAQDMS DAPYVLENLI ENWEEEHSAE
501: VRLHLLTAAM KCFFKRAPET QKALGTALAA GIADFHQDVH DRALFYYRVL QYDVHVAERV VSPPKQAVSV FADTQSSEIK DRVFDEFNSL SVIYQKPSYM
601: FTDKEHRGPF EFSDEVGNIS ITPEASSDIV PAQQYEANDK DLLLGIDEKD ENKGVSNNNG SAYTAPSLES SSNITSQMQE LAISGPATSA TTPQSFGFDD
701: LFGLGLSTAP APTPSPPLLK LNARAALDPG AFQQKWRQLP ISLTQECSVN PQGIAALTVP QSLIKHMQSH SIHCIASGGQ SPNFKFFFFA QKESEPSNYL
801: TECIINTSSA KAQIKVKADE QSTCQAFTTV FETALSKFGM P

Arabidopsis Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:F4JXV9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.