Factsheet for Solyc08g081320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g026360.2.1
Solyc04g026380.2.1
Solyc05g013340.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23460.1	Solyc04g026360.2.1	AT1G60780.1	23543752
AT4G23460.1	Solyc04g026380.2.1	AT1G60780.1	23543752
AT4G23460.1	Solyc05g013340.2.1	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031784	Potato	cytosol	96.21	96.53
KRH29071	Soybean	cytosol, endoplasmic reticulum	80.58	87.52
KRH77672	Soybean	endoplasmic reticulum	86.94	87.43
KRH24097	Soybean	endoplasmic reticulum	87.5	87.31
CDY13257	Canola	cytosol	87.39	87.1
Bra035228.1-P	Field mustard	cytosol	87.17	86.87
KRH27813	Soybean	endoplasmic reticulum, nucleus	86.72	86.53
AT4G23460.1	Thale cress	cytosol	86.05	86.34
Bra019302.1-P	Field mustard	cytosol	84.71	86.25
VIT_02s0025g00100.t01	Wine grape	cytosol	88.06	85.76
AT4G11380.2	Thale cress	cytosol	86.83	84.93
CDX94190	Canola	cytosol	84.93	84.56
GSMUA_Achr1P24200_001	Banana	cytosol	85.04	84.48
GSMUA_AchrUn_...	Banana	cytosol	84.93	84.37
Os03t0355600-01	Rice	plasma membrane	84.04	84.32
EER94839	Sorghum	cytosol	84.15	84.06
Zm00001d047464_P024	Maize	cytosol, mitochondrion, plastid	83.93	83.74
TraesCS4B01G165000.1	Wheat	cytosol, golgi	83.93	83.74
TraesCS4A01G166200.2	Wheat	cytosol	84.15	83.68
HORVU4Hr1G045980.10	Barley	cytosol	83.93	83.65
TraesCS4D01G166700.1	Wheat	cytosol	83.82	83.63
Zm00001d029196_P002	Maize	cytosol	79.46	83.47
Zm00001d030865_P001	Maize	cytosol	6.7	83.33
Zm00001d032260_P001	Maize	plastid	12.05	68.35
CDX86788	Canola	cytosol	87.05	67.53
Zm00001d018154_P001	Maize	extracellular	14.06	35.39
Solyc08g068210.2.1	Tomato	plastid	27.9	29.76
Solyc06g043030.2.1	Tomato	cytosol, peroxisome, plastid	24.33	19.16

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1150	MapMan:22.1.2.2	MapMan:22.1.3.2	Gene3D:3.30.310.10	InterPro:AP_beta
InterPro:AP_complex_bsu_1_2_4	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig
InterPro:Clathrin_app_Ig-like_sf	InterPro:Clathrin_b-adaptin_app_Ig-like	InterPro:Coatomer/calthrin_app_sub_C	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0030117	GO:GO:0030131	GO:GO:0030276	InterPro:IPR011989	InterPro:IPR012295	InterPro:IPR013037
UniProt:K4CPC9	PFAM:PF01602	PFAM:PF02883	PFAM:PF09066	PIRSF:PIRSF002291	PANTHER:PTHR11134
PANTHER:PTHR11134:SF3	SMART:SM00809	SMART:SM01020	SUPFAM:SSF48371	SUPFAM:SSF49348	SUPFAM:SSF55711
EnsemblPlantsGene:Solyc08g081320.2	EnsemblPlants:Solyc08g081320.2.1	InterPro:TBP_dom_sf	UniParc:UPI000276BEEA	SEG:seg	:

Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:K4CPC9]

Coordinates

chr8:-:64383434..64392071

Molecular Weight (calculated)

99661.2 Da

IEP (calculated)

4.813

GRAVY (calculated)

-0.097

Length

896 amino acids

Sequence
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQR CLKDDDPYVR KTAAICVAKL YDINAELVED RGFLDALKDL ISDNNPMVVA NAVAALAEIQ ESSSRPIFEI
201: TSHTLSKLLT ALNECTEWGQ VFILDALSKY KAADAREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVVRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ESFPEEPPQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIS DDSNQLDPSL LDELLSNIAT LSSVYHKPPE AFVTRVKTTQ KTEEEDYPEA
601: GEQSYSDSPA RVADSGASPP ASSANPQHPA SRQPAAPAAL PDLLDLGMDN SGSAIVSVDQ PASPAGPPLP VVLPASSGQG LQISAQLIRR DGQVFYSMMF
701: ENNSQVPLDG FMIQFNKNTF GLAAGGQLQV PQLLPGTSAS TLLPMVLFQN ISPGPANTLL QVAIKNNQQP VWYFNDKIYF HVLFTEDGRM ERSTFLETWK
801: SLPDSNEVSR DFPASVINSV ETTLDRLAAS NMFFIAKRKH ANQEVLYLSA KIPRGIPFLI ELTAVIGTPG VKCAIKTPSP EMAPLFFEAV ETLLKS

Best Arabidopsis Sequence Match ( AT4G23460.1 )
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSTSPIFEI
201: NSTILTKLLT ALNECTEWGQ VFILDALSRY KASDPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLDPSL LDELLANIST LSSVYHKPPE AFVTRLKTTV QKTEDEDYVE
601: GSETGYPEAS GNPVDGAASP SATTGYVTKL AAAPAPVPDL LGDLMGSDNA AIVPVDEPTT PSGRPLPVVL PASKGQGLQI SAQLTRQDGQ VFYSMLLENN
701: SQSLLDGFMI QFNKNSFGLA AVGSLQVPPL QPGASARTMM PMVLSQNMST GSTSSVLQVA VKNNQQPVWY FEDKIVLNAL FSEDGRMERG TFLETWKSLP
801: DSNEVQKEFP GITITSVEST LDLLAASNMF FIAKRKNGNQ DVLYLSAKVP RGIPFLIELT AIVGQPGLKC AVKTPTPEIA PLFFEAVEIL FKA

Arabidopsis Description

BETAC-ADBeta-adaptin-like protein C [Source:UniProtKB/Swiss-Prot;Acc:O81742]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.