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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY13257 Canola cytosol 92.58 94.33
Bra035228.1-P Field mustard cytosol 92.36 94.1
AT4G23460.1 Thale cress cytosol 89.85 92.16
Solyc08g081320.2.1 Tomato cytosol, extracellular, nucleus, plastid 84.93 86.83
KRH77672 Soybean endoplasmic reticulum 84.28 86.64
PGSC0003DMT400031784 Potato cytosol 83.73 85.89
KRH27813 Soybean endoplasmic reticulum, nucleus 83.95 85.63
KRH29071 Soybean cytosol, endoplasmic reticulum 76.97 85.45
KRH24097 Soybean endoplasmic reticulum 83.41 85.08
GSMUA_AchrUn_... Banana cytosol 83.3 84.59
Os03t0355600-01 Rice plasma membrane 82.31 84.43
TraesCS4B01G165000.1 Wheat cytosol, golgi 82.31 83.96
HORVU4Hr1G045980.10 Barley cytosol 82.31 83.87
GSMUA_Achr1P24200_001 Banana cytosol 82.53 83.81
TraesCS4D01G166700.1 Wheat cytosol 82.1 83.74
EER94839 Sorghum cytosol 81.99 83.72
VIT_02s0025g00100.t01 Wine grape cytosol 84.06 83.7
Zm00001d047464_P024 Maize cytosol, mitochondrion, plastid 81.77 83.41
Zm00001d030865_P001 Maize cytosol 6.55 83.33
TraesCS4A01G166200.2 Wheat cytosol 81.88 83.24
Zm00001d029196_P002 Maize cytosol 77.29 83.0
CDX86788 Canola cytosol 92.69 73.51
Zm00001d032260_P001 Maize plastid 11.79 68.35
Zm00001d018154_P001 Maize extracellular 13.97 35.96
AT5G11490.2 Thale cress cytosol, plastid 26.2 28.24
AT3G55480.2 Thale cress cytosol, plasma membrane, plastid 22.49 18.48
Protein Annotations
Gene3D:1.25.10.10Gene3D:2.60.40.1150MapMan:22.1.2.2MapMan:22.1.3.2Gene3D:3.30.310.10EntrezGene:826741
ProteinID:AEE83004.1InterPro:AP_betaInterPro:AP_complex_bsu_1_2_4InterPro:ARM-likeInterPro:ARM-type_foldArrayExpress:AT4G11380
EnsemblPlantsGene:AT4G11380RefSeq:AT4G11380TAIR:AT4G11380RefSeq:AT4G11380-TAIR-GEnsemblPlants:AT4G11380.2TAIR:AT4G11380.2
InterPro:B-adaptin_app_sub_CInterPro:Clathrin/coatomer_adapt-like_NInterPro:Clathrin_a/b/g-adaptin_app_IgInterPro:Clathrin_app_Ig-like_sfInterPro:Clathrin_b-adaptin_app_Ig-likeInterPro:Coatomer/calthrin_app_sub_C
UniProt:F4JNZ8GO:GO:0003674GO:GO:0005215GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005886GO:GO:0006810GO:GO:0006886
GO:GO:0008150GO:GO:0008565GO:GO:0015031GO:GO:0016020GO:GO:0016192GO:GO:0030117
GO:GO:0030131GO:GO:0030276InterPro:IPR011989InterPro:IPR012295InterPro:IPR013037RefSeq:NP_001190701.1
PFAM:PF01602PFAM:PF02883PFAM:PF09066PIRSF:PIRSF002291PO:PO:0000013PO:PO:0000037
PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025195PO:PO:0025281PANTHER:PTHR11134PANTHER:PTHR11134:SF3SMART:SM00809SMART:SM01020
SUPFAM:SSF48371SUPFAM:SSF49348SUPFAM:SSF55711InterPro:TBP_dom_sfUniParc:UPI0001E92F49SEG:seg
Description
Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:F4JNZ8]
Coordinates
chr4:+:6920489..6925576
Molecular Weight (calculated)
101921.0 Da
IEP (calculated)
4.649
GRAVY (calculated)
-0.051
Length
916 amino acids
Sequence
(BLAST)
001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKC DDSVHFSVTD WDIVTLVKLR LDKRKDAVKK VIAAMTVGKD VSSLFTDVVN CMQTENLELK KLVYLYLINY
101: AKSQPDLAIL AVNTFVKDSQ DPNPLIRALA VRTMGCIRVD KITEYLCDPL QKCLKDDDPY VRKTAAICVA KLFDINAELV EDRGFLEALK DLISDNNPMV
201: VANAVAALAE IQENSSSPIF EINSTTLTKL LTALNECTEW GQVFILDALS KYKAADPREA ENIVERVTPR LQHANCAVVL SAVKMILQQM ELITSTDVIR
301: NLCKKMAPPL VTLLSAEPEI QYVALRNINL IVQKRPTILA HEIKVFFCKY NDPIYVKMEK LEIMIKLASD RNIDQVLLEF KEYATEVDVD FVRKAVRAIG
401: RCAIKLERAA ERCISVLLEL IKIKVNYVVQ EAIIVIKDIF RRYPNTYESI IATLCESLDT LDEPEAKASM IWIIGEYAER IDNADELLES FLENFPEEPA
501: QVQLQLLTAT VKLFLKKPTE GPQQMIQVVL NNATVETDNP DLRDRAYIYW RLLSTDPEAA KDVVLAEKPV ISDDSNQLDP SLLDELLTNI STLSSVYHKP
601: PEAFVTRLKT TVQKTEDEDF AEGSEAGYSS SNPVDSAASP PGNIPQPSGR QPAPAVPAPV PDLLGDLMGL DNAAIVPVDD PITQSGPPLP VVVPASSGQG
701: LQISAQLSRK DGQVFYSMLF ENNSQSVLDG FMIQFNKNTF GLAAAGSLQI PPLHPATSAR TMLPMVLFQN MSAGPPSSLL QVAVKNNQQP VWYFTDKIIL
801: HALFGEDGRM ERGTFLETWR SLPDSNEVLK EFPGITITSV ESTIELLTAF NMFFIAKRKN GNQDVIYLSA KDPRDVPFLI ELTAMVGQPG LKCAVKTPTP
901: EIAPLFFEAL ELLFKA
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.