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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • cytosol 2
  • plastid 3
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:plastid
PProwler:plastid
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX70396 Canola plastid 91.18 92.26
Bra006100.1-P Field mustard plastid 90.82 91.9
CDX78425 Canola plastid 90.82 91.9
KRH52665 Soybean plastid 78.24 78.7
KRH62012 Soybean plastid 78.12 78.58
VIT_04s0008g03880.t01 Wine grape cytosol, plastid 78.0 78.55
PGSC0003DMT400037585 Potato cytosol 76.35 77.26
Solyc08g068210.2.1 Tomato plastid 76.12 77.02
GSMUA_Achr1P13670_001 Banana cytosol 73.88 74.58
VIT_00s0153g00080.t01 Wine grape cytosol 12.35 72.41
TraesCS3A01G228800.1 Wheat plastid 68.71 69.44
TraesCS3D01G226500.1 Wheat plastid 68.47 69.2
TraesCS3B01G255800.2 Wheat plastid 68.47 69.2
EES01104 Sorghum plastid 68.71 69.11
Zm00001d044164_P002 Maize plastid 68.47 68.15
Zm00001d011411_P002 Maize plastid 68.94 67.82
HORVU3Hr1G055990.1 Barley cytosol, plastid 68.35 66.94
Os01t0626100-01 Rice plasma membrane 16.12 66.5
Os01t0626200-01 Rice cytosol 2.47 39.62
AT4G11380.2 Thale cress cytosol 28.24 26.2
AT4G23460.1 Thale cress cytosol 27.41 26.09
AT3G55480.2 Thale cress cytosol, plasma membrane, plastid 17.65 13.45
Protein Annotations
Gene3D:1.25.10.10MapMan:22.5.2.2.2Gene3D:3.30.310.10EntrezGene:831021ProteinID:AED91686.1InterPro:AP_beta
InterPro:AP_complex_bsu_1_2_4InterPro:ARM-likeInterPro:ARM-type_foldArrayExpress:AT5G11490EnsemblPlantsGene:AT5G11490RefSeq:AT5G11490
TAIR:AT5G11490RefSeq:AT5G11490-TAIR-GEnsemblPlants:AT5G11490.2TAIR:AT5G11490.2Unigene:At.5131InterPro:B-adaptin_app_sub_C
InterPro:Clathrin/coatomer_adapt-like_NUniProt:F4JXV9GO:GO:0003674GO:GO:0005215GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006810GO:GO:0006886
GO:GO:0008150GO:GO:0008565GO:GO:0015031GO:GO:0016020GO:GO:0016192GO:GO:0030117
GO:GO:0030124GO:GO:0030131GO:GO:0030276InterPro:IPR011989InterPro:IPR012295RefSeq:NP_001190290.1
PFAM:PF01602PFAM:PF09066PIRSF:PIRSF002291PO:PO:0000013PO:PO:0000037PO:PO:0000230
PO:PO:0000293PO:PO:0001016PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PANTHER:PTHR11134PANTHER:PTHR11134:SF26
SMART:SM01020SUPFAM:SSF48371InterPro:TBP_dom_sfUniParc:UPI0001E9307FSEG:seg:
Description
Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:F4JXV9]
Coordinates
chr5:+:3671788..3676452
Molecular Weight (calculated)
94361.5 Da
IEP (calculated)
5.046
GRAVY (calculated)
-0.112
Length
850 amino acids
Sequence
(BLAST)
001: MAPPAASQRY PSPSQPSGKS EVSDLKTQLR QLAGSRAPGV DDSKRDLYKK VISYMTIGID VSSVFGEMVM CSATSDIVLK KMCYLYVGNY AKGNPDLSLL
101: TINFLQRDCK DEDPMIRGLA LRSLCSLRVP NLVEYLVGPL GSGLKDNNSY VRTIAVTGVL KLYHISPSTC IDADFPATLK SLMLHDSDAQ VVANCLSALQ
201: EIWSLEASHS EEACREKESL LSKPVIYYFL NRIKEFNEWA QCLILELAVK YVPSDSNDIF DIMNLLEDRL QHANGAVVLA TVKVFLQLTL SMTDVHQQVY
301: ERIKSPLLTL VSSGSPEQSY AILSHLHLLV VRAPFIFAAD YKHFYCQYNE PSYVKKLKLE MLTAVANESN TYEIVTELCE YAANVDIAIA RESIRAVGKI
401: ALQQYDVNAI VDRLLQFLEM EKDYVTAETL VLVKDLLRKY PQWSHDCISV VGGISSKNIQ EPKAKAALIW MLGEYAQDMS DAPYVLENLI ENWEEEHSAE
501: VRLHLLTAAM KCFFKRAPET QKALGTALAA GIADFHQDVH DRALFYYRVL QYDVHVAERV VSPPKQAVSV FADTQSSEIK DRVFDEFNSL SVIYQKPSYM
601: FTDKEHRGPF EFSDEVGNIS ITPEASSDIV PAQQYEANDK DLLLGIDEKD ENKGVSNNNG SAYTAPSLES SSNITSQMQE LAISGPATSA TTPQSFGFDD
701: LFGLGLSTAP APTPSPPLLK LNARAALDPG AFQQKWRQLP ISLTQECSVN PQGIAALTVP QSLIKHMQSH SIHCIASGGQ SPNFKFFFFA QKESEPSNYL
801: TECIINTSSA KAQIKVKADE QSTCQAFTTV FETALSKFVS LTFDFVSLCY
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.