Factsheet for GSMUA_Achr1P13670_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62012	Soybean	plastid	77.91	77.63
VIT_04s0008g03880.t01	Wine grape	cytosol, plastid	77.79	77.61
KRH52665	Soybean	plastid	77.67	77.4
EES01104	Sorghum	plastid	77.55	77.28
TraesCS3D01G226500.1	Wheat	plastid	76.6	76.69
TraesCS3A01G228800.1	Wheat	plastid	76.6	76.69
TraesCS3B01G255800.2	Wheat	plastid	76.48	76.58
Zm00001d044164_P002	Maize	plastid	77.2	76.11
Solyc08g068210.2.1	Tomato	plastid	75.77	75.95
PGSC0003DMT400037585	Potato	cytosol	75.53	75.71
Os01t0626100-01	Rice	plasma membrane	18.41	75.24
Bra006100.1-P	Field mustard	plastid	75.06	75.24
CDX70396	Canola	plastid	75.06	75.24
CDX78425	Canola	plastid	75.06	75.24
CDX97117	Canola	plastid	74.94	74.94
Zm00001d011411_P002	Maize	plastid	76.84	74.88
AT5G11490.2	Thale cress	cytosol, plastid	74.58	73.88
HORVU3Hr1G055990.1	Barley	cytosol, plastid	76.01	73.73
CDX70642	Canola	cytosol	17.46	70.0
VIT_00s0153g00080.t01	Wine grape	cytosol	12.0	69.66
Os01t0626200-01	Rice	cytosol	2.97	47.17
GSMUA_Achr1P24200_001	Banana	cytosol	29.22	27.27
GSMUA_AchrUn_...	Banana	cytosol	28.74	26.83
GSMUA_Achr10P...	Banana	cytosol	11.88	22.12
GSMUA_Achr7P15120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	13.42	15.87
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	8.19	9.69

Protein Annotations

Gene3D:1.25.10.10	MapMan:22.5.2.2.2	Gene3D:3.30.310.10	InterPro:AP_beta	InterPro:AP_complex_bsu_1_2_4	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C	InterPro:Clathrin/coatomer_adapt-like_N	ncoils:Coil	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	GO:GO:0030124	GO:GO:0030131	GO:GO:0030276	EnsemblPlantsGene:GSMUA_Achr1G13670_001
EnsemblPlants:GSMUA_Achr1P13670_001	EnsemblPlants:GSMUA_Achr1T13670_001	InterPro:IPR011989	InterPro:IPR012295	UniProt:M0RZM5	PFAM:PF01602
PFAM:PF09066	PIRSF:PIRSF002291	PANTHER:PTHR11134	PANTHER:PTHR11134:SF26	SMART:SM01020	SUPFAM:SSF48371
InterPro:TBP_dom_sf	UniParc:UPI000296F8FF	SEG:seg	:	:	:

Description

Beta-adaptin-like protein A [Source:GMGC_GENE;Acc:GSMUA_Achr1G13670_001]

Coordinates

chr1:+:10418691..10428910

Molecular Weight (calculated)

92962.3 Da

IEP (calculated)

4.994

GRAVY (calculated)

-0.081

Length

842 amino acids

Sequence
(BLAST)

001: MAPPPAPPQK SPSPSQPSGK SEVSDLKLQL RQLAGSRAPG ADDSKRDLFK RVISYMTVGI DVSAAFSEMV MCSATSDIVL KKMCYLYVGN YARCHPDLAL
101: LTINFLQKDC HDEDPMIRGL ALRSLCSLRV PNLVEYLVAP LGAGLKDGSS YVRMVAAVGV LKLYHISAAT CLDSDFPAVL KSLMLTDPDA QVVANCLFVL
201: QEIWNLEANK SEEASRERET LLSKKIVYYI LNRIKEFNEW AQCLVLELVA KYIPSDTDDI FDIMNLLEDR LQHANGAVVL ATIKVFLHLT MSMTDVHQQV
301: YERIKAPLLT LVGSGSSEQS YAVLSHLHLL VMRAPMLFSS DYKHFYCQFS DPSYVKKLKL EMLTAIANES NTYEIVTELC EYAGNVDVPI ARESIRAVGK
401: IALQQYDVNA IVDRLLQFLE MEKDYVTAET LVLVKDLLRK YPQWSHDCIA VVGNISSKNV QEPKAKAALI WMLGEYSQDM PDAPYILESL IENWDEENAA
501: EVRLHLLTAA MKCFFKRPPE TQKALGAALA AGLADSHQDV HDRALFYYRL LQYDVSVAER VVNPPKQAVS VFADTQSSEI KDRIFDEFNS LSVVYQKPSY
601: MFTDKEHREP FEFSEEIGNL SLGQEPVGNS PRYDESDKDL LLSTSEREEN GGPSTNGPAA SGYSAPTDYN SSLVSLSSQT QSETAISDPG MPKYTSQMTL
701: AIDDLLGLSV SAAPAPPSLK LNPKAALDPG TFQRKWGQLA VSISQDCSVS PQGIAALTTP QALIRHMQAS SIQCIASGGQ SPNFKFFFFA QKLDGPPLFF
801: LVECIVNTSS AKAQVKIKAD DATASEAFFG LFQSALSKFG VL

Best Arabidopsis Sequence Match ( AT5G11490.1 )
(BLAST)

001: MAPPAASQRY PSPSQPSGKS EVSDLKTQLR QLAGSRAPGV DDSKRDLYKK VISYMTIGID VSSVFGEMVM CSATSDIVLK KMCYLYVGNY AKGNPDLSLL
101: TINFLQRDCK DEDPMIRGLA LRSLCSLRVP NLVEYLVGPL GSGLKDNNSY VRTIAVTGVL KLYHISPSTC IDADFPATLK SLMLHDSDAQ VVANCLSALQ
201: EIWSLEASHS EEACREKESL LSKPVIYYFL NRIKEFNEWA QCLILELAVK YVPSDSNDIF DIMNLLEDRL QHANGAVVLA TVKVFLQLTL SMTDVHQQVY
301: ERIKSPLLTL VSSGSPEQSY AILSHLHLLV VRAPFIFAAD YKHFYCQYNE PSYVKKLKLE MLTAVANESN TYEIVTELCE YAANVDIAIA RESIRAVGKI
401: ALQQYDVNAI VDRLLQFLEM EKDYVTAETL VLVKDLLRKY PQWSHDCISV VGGISSKNIQ EPKAKAALIW MLGEYAQDMS DAPYVLENLI ENWEEEHSAE
501: VRLHLLTAAM KCFFKRAPET QKALGTALAA GIADFHQDVH DRALFYYRVL QYDVHVAERV VSPPKQAVSV FADTQSSEIK DRVFDEFNSL SVIYQKPSYM
601: FTDKEHRGPF EFSDEVGNIS ITPEASSDIV PAQQYEANDK DLLLGIDEKD ENKGVSNNNG SAYTAPSLES SSNITSQMQE LAISGPATSA TTPQSFGFDD
701: LFGLGLSTAP APTPSPPLLK LNARAALDPG AFQQKWRQLP ISLTQECSVN PQGIAALTVP QSLIKHMQSH SIHCIASGGQ SPNFKFFFFA QKESEPSNYL
801: TECIINTSSA KAQIKVKADE QSTCQAFTTV FETALSKFGM P

Arabidopsis Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:F4JXV9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.