Factsheet for GSMUA_Achr10P22650_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076344	Potato	cytosol	41.01	45.7
TraesCS3B01G600100.1	Wheat	cytosol, golgi, mitochondrion, nucleus	38.06	42.74
TraesCS3B01G599800.1	Wheat	golgi, mitochondrion, plasma membrane, plastid	34.69	42.01
Os01t0973300-01	Rice	cytosol	42.28	32.47
VIT_13s0019g01530.t01	Wine grape	cytosol	45.79	28.6
TraesCS3A01G530000.1	Wheat	cytosol	41.99	27.53
TraesCS3B01G599600.1	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	42.13	27.2
EES13267	Sorghum	cytosol	41.99	27.16
Solyc06g043030.2.1	Tomato	cytosol, peroxisome, plastid	43.4	27.15
TraesCS3D01G535400.1	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	41.71	26.98
KRH15094	Soybean	cytosol, peroxisome, plastid	42.7	26.9
KRH73041	Soybean	cytosol, peroxisome, plastid	42.42	26.73
Zm00001d035093_P002	Maize	plastid	42.13	26.27
CDY40224	Canola	cytosol, plasma membrane, plastid	40.03	26.1
CDY41227	Canola	cytosol	39.33	25.62
GSMUA_Achr7P15120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	25.56	25.56
HORVU3Hr1G115880.4	Barley	cytosol, plastid	41.99	25.38
AT3G55480.2	Thale cress	cytosol, plasma membrane, plastid	39.19	25.02
Bra007167.1-P	Field mustard	cytosol	33.85	24.1
GSMUA_AchrUn_...	Banana	cytosol	13.48	10.64
GSMUA_Achr1P24200_001	Banana	cytosol	13.48	10.64
GSMUA_Achr1P13670_001	Banana	cytosol	9.69	8.19
GSMUA_Achr10P...	Banana	cytosol	1.12	1.77

Protein Annotations

Gene3D:1.25.10.10	MapMan:22.1.5.2	InterPro:AP3B_C	InterPro:AP3_beta	InterPro:AP_beta	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Clathrin/coatomer_adapt-like_N	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0030117	GO:GO:0030123	EnsemblPlantsGene:GSMUA_Achr10G22650_001
EnsemblPlants:GSMUA_Achr10P22650_001	EnsemblPlants:GSMUA_Achr10T22650_001	InterPro:IPR011989	UniProt:M0RKJ0	PFAM:PF01602	PFAM:PF14796
PANTHER:PTHR11134	PANTHER:PTHR11134:SF1	SMART:SM01355	SUPFAM:SSF48371	TMHMM:TMhelix	UniParc:UPI0002964D8F
SEG:seg	:	:	:	:	:

Description

Putative AP3-complex subunit beta-A [Source:GMGC_GENE;Acc:GSMUA_Achr10G22650_001]

Coordinates

chr10:+:27766268..27772166

Molecular Weight (calculated)

79384.9 Da

IEP (calculated)

6.151

GRAVY (calculated)

0.102

Length

712 amino acids

Sequence
(BLAST)

001: MVASTCLEGL LGLIFHESSI SSSSQLDGEA GVLVQAIMSI KAIIKHDPTS YDKVIVRLAC NLDRVKEPAA RALIIWIIGE YCSVGQIIPR ILPSVLKYLA
101: WTFNSEELET KLQTLNTAAK VLLCTEGEDL LTFRKILSYV IELAKYDSNY DIRDRARFIL KLVPRNLTTT SEEETTSCFL QNVGIHHEFA ENIFSGKIHS
201: TASSAKSFRI YLPGSLSQIV LHAAPGYEPL PKPCSLHAND LKLRDHDASS GSSFEESGSV YDSHHSIISS DSEGNEITTS QSAKGNLSAL VSTDLAELMS
301: KSALESWLDE QPGLTSVQMS QQPPSGRISI NNLDCTVTPK IHMLLDPTNG NGLRVEYAFS YEVSTISPVM VQIEVFFENC LSESLVKIAL KDGEYNSRVD
401: SSDPVLEEHE SLLPTDNAPS MLPSEEIASL DPGQRLKKVI QVRFHHHLLP FKVAVLCNGK KYLTKLWPDI GYFLRPLSMS MDAFIEKERQ LPGMFECTKR
501: CTFKEHIDHE KDDSSFHSDK IILISRTIAS KVLSNSNVFL VSVDIPVSFN IDDASGLCLR FSGEILSSSK PCLIAILAEG KFSEPLDMAV KINCEETVFG
601: LNLLNRVVVV EINHIVRLIV VSIMPNIQVC NSTLLFSLFT NLATNLAFLL LSQRTSISFV RLCACRRGFI CRTSHFWFFF FFPSGNLYFC GEILFLFFKY
701: SQCSHIILSM KL

Best Arabidopsis Sequence Match ( AT3G55480.2 )
(BLAST)

0001: MFNKFGSTSE TLSKASAGLL RIGTDAHLYD DPEDVNIAPL LDSKFESEKC EALKRLLALI AQGFDVSNFF PQVVKNVASQ SSEVKKLVYL YLLQYAEKRP
0101: NEALLSINYF QKDLGDPNPL VRAWALRTMA GIRLHVIAPL ALAAVSKCAR DPAVYVRRCA ANALPKLHDL RLEEHASAIE ELVGILLNDH SPGVVGAAAA
0201: AFTSICPNNF KLIGKNYKKL CQILPDVEEW GQILLIGTLL RYVVARHGLV RESLMLSIHG TNSNGFCEKD GLGRDLTLDK EDGGKSDSFD VNLVSLVSKC
0301: YIQGPDEYLS RSSCTDTVSS AFDTKETTSI AHNEDVKILL QCTSPLLWSN NSAVVLAAAG VQWIMAPLED VKKIVKPLLF LLRSSSASKY VVLCNILVFA
0401: KAVPSLFAPH FENFFICSSD AYQVKAYKLE MLSLIATTSS IASILREFED YIKDPDRRFA ADTVAAIGLC AKRLMTIPTT CLDGLLALVR QESFAGDFES
0501: ADGEAGVLVQ AVMSIQTMIE RDPLRHEKVL IQLFRSLDSI KVAAARATII WMVGVYCSLG HIIPRMLTTI TKYLAWSFKS EASETKLQIL NTIAKVLISA
0601: EAGDFHMLKR IVVYVFELGE YDLSYDIRDR TRFLKKLLSC KLASHEPAED SVASQENIAA HVVEHVFGRK LKSVSPITLH NRFYLPGSLS QIVLHAAPGY
0701: EPLPKPCSFV YEEQDQLSDL DKQREAAADL DGSEESSETG DENGSSDYDS ESSNGSDFSS EGDERTVSND ANDPAAPLIQ ISETSVSADQ EELRSRRALD
0801: LWLDDQPSTS NQTPSALNSN QSSYAKISIG DVGSRVKPKS YSLVDPGNGS GLKVDYAFLS EVSNVSPLHV CVEVLFENSS AEPILEVNLE DEESMKVADS
0901: SEQTLVGKAN ASYNNIPTLI PMEEISCLEP HQSTKRLIQV RFHHHLLPMR LTLHYNEKKV PVKLRPDLGY LVKPFSMSIE EFLATESRLP GMFEYSRRCT
1001: FDDHVKDSRT ENGKDKFLSI CESITLKVLS NSNLHLVSVD LPVANSLEDA TGLRLRFSSK ILSSEIPLLI TITVEGKCTE VLNLTVKINC EETVFGLNLL
1101: NRIANFMVEP SSSAT

Arabidopsis Description

PAT2AP-3 complex subunit beta [Source:UniProtKB/TrEMBL;Acc:F4IWW1]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.