Factsheet for Bra007167.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40224	Canola	cytosol, plasma membrane, plastid	92.6	84.8
CDY41227	Canola	cytosol	91.8	83.99
AT3G55480.2	Thale cress	cytosol, plasma membrane, plastid	85.4	76.59
GSMUA_Achr10P...	Banana	cytosol	28.7	63.5
KRH73041	Soybean	cytosol, peroxisome, plastid	62.7	55.49
VIT_13s0019g01530.t01	Wine grape	cytosol	63.0	55.26
KRH15094	Soybean	cytosol, peroxisome, plastid	62.2	55.04
Solyc06g043030.2.1	Tomato	cytosol, peroxisome, plastid	60.6	53.25
TraesCS3B01G599600.1	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	50.7	45.97
TraesCS3D01G535400.1	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	50.5	45.87
TraesCS3A01G530000.1	Wheat	cytosol	49.8	45.86
EES13267	Sorghum	cytosol	49.8	45.23
HORVU3Hr1G115880.4	Barley	cytosol, plastid	50.5	42.87
Zm00001d035093_P002	Maize	plastid	48.8	42.73
Os01t0973300-01	Rice	cytosol	37.1	40.02
GSMUA_Achr7P15120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	28.1	39.47
PGSC0003DMT400076344	Potato	cytosol	24.6	38.5
TraesCS3B01G600100.1	Wheat	cytosol, golgi, mitochondrion, nucleus	21.6	34.07
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	24.1	33.85
TraesCS3B01G599800.1	Wheat	golgi, mitochondrion, plasma membrane, plastid	19.4	32.99
Bra019302.1-P	Field mustard	cytosol	19.9	22.61
Bra035228.1-P	Field mustard	cytosol	19.8	22.02
Bra006100.1-P	Field mustard	plastid	15.2	18.1

Protein Annotations

Gene3D:1.25.10.10	MapMan:22.1.5.2	InterPro:AP3_beta	InterPro:AP_beta	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlantsGene:Bra007167	EnsemblPlants:Bra007167.1	EnsemblPlants:Bra007167.1-P	InterPro:Clathrin/coatomer_adapt-like_N	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0006896	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0016192	GO:GO:0019725	GO:GO:0030117	GO:GO:0030123	GO:GO:0051453	GO:GO:0080171
InterPro:IPR011989	UniProt:M4CSH5	PFAM:PF01602	PIRSF:PIRSF037096	PANTHER:PTHR11134	PANTHER:PTHR11134:SF1
SUPFAM:SSF48371	UniParc:UPI0002542A8F	SEG:seg	:	:	:

Description

AT3G55480 (E=0.0) | adaptin family protein

Coordinates

chrA09:-:27675671..27680296

Molecular Weight (calculated)

110586.0 Da

IEP (calculated)

5.362

GRAVY (calculated)

-0.025

Length

1000 amino acids

Sequence
(BLAST)

001: MFNQFGSTAE TLSKASAAVL RIGTDAHLYD DPEDVNIAPL LDSKFESEKC EALKRLLALI AQGFDVSNFF PQVVKNVASQ SSEVKKLVYL YLLHYAEKRP
101: NEALLSINYF QKDLGDPNPL VRAWALRTMA GIRLHVIAPL ALAAVGKCAR DPAVYVRKCA ANALPKLHDL RLEEHAPAIE ELVGILLNDH SPGVVGAAAA
201: AFTSICPNNF SLIGKNYKKL CQILPDVEEW GQILLIGTLL RYVVARHGLV RESLMLSLHG LESNGFYEKD GLVGDKKDGD KSDSFDANLV SLVSKCYIEG
301: PDEYLSRSNG VDTVAASFDS KETTSVGDNE DVKILLQCTS PLLWSNNSAV VLAAAGVQWI VAPLEDVKKI VKPLLFLLRS STASKYVVLC NILVFAKAVP
401: SLFAPHFEDF FICSSDAYQV KAHKLEMLSL IATTSSISSI LREFEDYIKD PDRRFAADTV AAIGLCAKRL PEIPTACLNG LLALVRQESF AGDLELVDGE
501: AGVLVQAVMS IQTIIERDPL SHEKVIIQLF RSLDSVKVAA ARATIIWMVG VYCSLGHIIP RMLTTITKYL AWSFKSEASE TKLQILNTAA KVLISAEVED
601: FQMLKKIVLY VLELGECDLN YDVRDRTRFL KKMLSYKLAC HEPTEDSVAS QENIAEHVVE HVFGRKLKPF SPLNLHNRFY LPGSLSQVVL HAAPGYEPLP
701: KPCSFVVEEH DQLSDSGRQR EAMSGLNGSQ ESSETVDEDG SSEYDSESYN GSDFSSDGDE RNDANDAADP LIRFSDIAVS TDQEEPRSKR ALDLCASYNN
801: VPTLIPMEEL SCLEPGQSAK RLIQVRFHHH LLPMRLSLHY NGKNVPVKLR PDLGYLVKPF SITIEEFLST ESRLPGMFEY TRRCTFTDHI KDTRMENGKD
901: KFLTICESIT LKVLSNSNLH LVSVDLPVAS TLEDATGLRL RFSSKILSSE IPLLITITVQ GKCNEDLNLT VKINCEETVF GLNLLNRIAN FMVETSSSAS

Best Arabidopsis Sequence Match ( AT3G55480.2 )
(BLAST)

0001: MFNKFGSTSE TLSKASAGLL RIGTDAHLYD DPEDVNIAPL LDSKFESEKC EALKRLLALI AQGFDVSNFF PQVVKNVASQ SSEVKKLVYL YLLQYAEKRP
0101: NEALLSINYF QKDLGDPNPL VRAWALRTMA GIRLHVIAPL ALAAVSKCAR DPAVYVRRCA ANALPKLHDL RLEEHASAIE ELVGILLNDH SPGVVGAAAA
0201: AFTSICPNNF KLIGKNYKKL CQILPDVEEW GQILLIGTLL RYVVARHGLV RESLMLSIHG TNSNGFCEKD GLGRDLTLDK EDGGKSDSFD VNLVSLVSKC
0301: YIQGPDEYLS RSSCTDTVSS AFDTKETTSI AHNEDVKILL QCTSPLLWSN NSAVVLAAAG VQWIMAPLED VKKIVKPLLF LLRSSSASKY VVLCNILVFA
0401: KAVPSLFAPH FENFFICSSD AYQVKAYKLE MLSLIATTSS IASILREFED YIKDPDRRFA ADTVAAIGLC AKRLMTIPTT CLDGLLALVR QESFAGDFES
0501: ADGEAGVLVQ AVMSIQTMIE RDPLRHEKVL IQLFRSLDSI KVAAARATII WMVGVYCSLG HIIPRMLTTI TKYLAWSFKS EASETKLQIL NTIAKVLISA
0601: EAGDFHMLKR IVVYVFELGE YDLSYDIRDR TRFLKKLLSC KLASHEPAED SVASQENIAA HVVEHVFGRK LKSVSPITLH NRFYLPGSLS QIVLHAAPGY
0701: EPLPKPCSFV YEEQDQLSDL DKQREAAADL DGSEESSETG DENGSSDYDS ESSNGSDFSS EGDERTVSND ANDPAAPLIQ ISETSVSADQ EELRSRRALD
0801: LWLDDQPSTS NQTPSALNSN QSSYAKISIG DVGSRVKPKS YSLVDPGNGS GLKVDYAFLS EVSNVSPLHV CVEVLFENSS AEPILEVNLE DEESMKVADS
0901: SEQTLVGKAN ASYNNIPTLI PMEEISCLEP HQSTKRLIQV RFHHHLLPMR LTLHYNEKKV PVKLRPDLGY LVKPFSMSIE EFLATESRLP GMFEYSRRCT
1001: FDDHVKDSRT ENGKDKFLSI CESITLKVLS NSNLHLVSVD LPVANSLEDA TGLRLRFSSK ILSSEIPLLI TITVEGKCTE VLNLTVKINC EETVFGLNLL
1101: NRIANFMVEP SSSAT

Arabidopsis Description

PAT2AP-3 complex subunit beta [Source:UniProtKB/TrEMBL;Acc:F4IWW1]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.