Factsheet for Zm00001d035093_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13267	Sorghum	cytosol	88.97	92.28
TraesCS3D01G535400.1	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	71.89	74.57
TraesCS3B01G599600.1	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	71.89	74.43
TraesCS3A01G530000.1	Wheat	cytosol	70.4	74.03
Os01t0973300-01	Rice	cytosol	59.11	72.82
HORVU3Hr1G115880.4	Barley	cytosol, plastid	71.72	69.52
TraesCS3B01G600100.1	Wheat	cytosol, golgi, mitochondrion, nucleus	36.69	66.09
TraesCS3B01G599800.1	Wheat	golgi, mitochondrion, plasma membrane, plastid	33.19	64.46
GSMUA_Achr10P...	Banana	cytosol	24.78	62.61
VIT_13s0019g01530.t01	Wine grape	cytosol	50.96	51.05
KRH73041	Soybean	cytosol, peroxisome, plastid	49.82	50.35
Solyc06g043030.2.1	Tomato	cytosol, peroxisome, plastid	50.0	50.18
KRH15094	Soybean	cytosol, peroxisome, plastid	49.56	50.09
CDY40224	Canola	cytosol, plasma membrane, plastid	46.94	49.08
Bra007167.1-P	Field mustard	cytosol	42.73	48.8
CDY41227	Canola	cytosol	46.67	48.76
AT3G55480.2	Thale cress	cytosol, plasma membrane, plastid	45.97	47.09
PGSC0003DMT400076344	Potato	cytosol	24.34	43.51
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	26.27	42.13
GSMUA_Achr7P15120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	25.57	41.01
Zm00001d030865_P001	Maize	cytosol	2.01	31.94
Zm00001d032260_P001	Maize	plastid	3.68	26.58
Zm00001d029196_P002	Maize	cytosol	18.65	24.97
Zm00001d047464_P024	Maize	cytosol, mitochondrion, plastid	19.35	24.61
Zm00001d044164_P002	Maize	plastid	14.54	19.44
Zm00001d011411_P002	Maize	plastid	14.54	19.21
Zm00001d018154_P001	Maize	extracellular	5.69	18.26

Protein Annotations

Gene3D:1.25.10.10	MapMan:22.1.5.2	UniProt:A0A1D6LED5	InterPro:AP3B_C	InterPro:AP3_beta	InterPro:AP_beta
ProteinID:AQK78342.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Clathrin/coatomer_adapt-like_N	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0006896	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0016192	GO:GO:0019725	GO:GO:0030117	GO:GO:0030123	GO:GO:0051453	GO:GO:0080171
InterPro:IPR011989	PFAM:PF01602	PFAM:PF14796	PIRSF:PIRSF037096	PANTHER:PTHR11134	PANTHER:PTHR11134:SF1
SMART:SM01355	SUPFAM:SSF48371	UniParc:UPI000220B1CC	EnsemblPlantsGene:Zm00001d035093	EnsemblPlants:Zm00001d035093_P002	EnsemblPlants:Zm00001d035093_T002
SEG:seg	:	:	:	:	:

Description

AP3-complex subunit beta-A

Coordinates

chr6:+:4928001..4934917

Molecular Weight (calculated)

125696.0 Da

IEP (calculated)

5.176

GRAVY (calculated)

0.067

Length

1142 amino acids

Sequence
(BLAST)

0001: MFGLQASGAA ASWVVGRMGT DAHLYDDPDD ASIPELLDSR FDADKVDALK RLLALIAQGV DVAHLFPQVV KNVASQSLEV KKLVYLYLLH YADKRQNEAL
0101: LSINIFQKDL SDINPLVRAW ALRTMAGIRL HVVAPLVLVA IKKCARDPSA YVRKCAAYAL CKLCDLIPDE NAALEEVLSS ITHTFFSMQQ LCIPYTYLKP
0201: ALLMLLQIVD TLFSDNSPGV VGAAAVAFKS VCPSCLPLVS KHFRRLCETL PDIEEWTQIV LIEILLRYVI ARHGLVKDSL LFASDLPTEI HGVTDSDAVA
0301: SVPTQSDSIV NGVSDTISSI MLFRHYIEQC SGSSDREGNN LELSSVTANN NDDVTILLKC TSPLLWSRNS GVVLAAASVH WIMAPIGDMK KIVGPILFTL
0401: RSSPDAAYVM LGNIVVFVKT MPSLFAPFYE DFFVNTSDPY QTRALKLEIL TTIATESSIP AIFEEFQDYI KDPDRKFVAD TVAAIALCAQ KLPSIATSCL
0501: EGLLALVFYE SFISNSVHLD GEDAVLVQAI LSIKAIVKMD PVSHEKVCCN VQSCIRAVIV RLVRGLDKLK EPAARSLIIW MFGEYSFMGD LTTKIVPPVL
0601: KYLAWSFVAE VVETKLQILN SSAKVIMRCT EEDMEEFKSI VAYVIELATC DLNYDVRDRA RLLSRLLPCY MTHQGSSHQP QNGDIYKELA NHIFNGKLQP
0701: TSHPASNYRI YLPGSLSQVV LHAAPGYAPL PKPQSMELNH NVTAAIRGKA KLSGSDSDAE SGSSTYESSS VYDSESEGAG LSDRDTVESH QAQEDNQDAP
0801: LVQIYDASIQ QGQAGQNTEE NLADLISTDL TELMSKSALE SWLDEAPAEP VVQNLTQTSS ARVSFTNRNF ERKPKLHTLL DPSGSNGLSV LYAFSPEVSP
0901: RSRLLVCVDL YFENVTTQQL TDITIESEEA SSSVDFIDQT SEGYSGVPTI VPVEGIHSLA PQQMAKLVLQ VHFHHHILPL KLSVFCNGKR HPAKLHPDIA
1001: YFVRPLPMDL NTFLCKENQL RGMFEYARRC AFKDHLQKLG HEDSAEHIDK NLQVAQSVAS KILSNANIHL VSMDMPVTFS VDDASGLCWR FSGEILSTSK
1101: PCLITILAEG RASGPLDLAV KVNSEDTVFA LNLLNRVVAI ID

Best Arabidopsis Sequence Match ( AT3G55480.2 )
(BLAST)

0001: MFNKFGSTSE TLSKASAGLL RIGTDAHLYD DPEDVNIAPL LDSKFESEKC EALKRLLALI AQGFDVSNFF PQVVKNVASQ SSEVKKLVYL YLLQYAEKRP
0101: NEALLSINYF QKDLGDPNPL VRAWALRTMA GIRLHVIAPL ALAAVSKCAR DPAVYVRRCA ANALPKLHDL RLEEHASAIE ELVGILLNDH SPGVVGAAAA
0201: AFTSICPNNF KLIGKNYKKL CQILPDVEEW GQILLIGTLL RYVVARHGLV RESLMLSIHG TNSNGFCEKD GLGRDLTLDK EDGGKSDSFD VNLVSLVSKC
0301: YIQGPDEYLS RSSCTDTVSS AFDTKETTSI AHNEDVKILL QCTSPLLWSN NSAVVLAAAG VQWIMAPLED VKKIVKPLLF LLRSSSASKY VVLCNILVFA
0401: KAVPSLFAPH FENFFICSSD AYQVKAYKLE MLSLIATTSS IASILREFED YIKDPDRRFA ADTVAAIGLC AKRLMTIPTT CLDGLLALVR QESFAGDFES
0501: ADGEAGVLVQ AVMSIQTMIE RDPLRHEKVL IQLFRSLDSI KVAAARATII WMVGVYCSLG HIIPRMLTTI TKYLAWSFKS EASETKLQIL NTIAKVLISA
0601: EAGDFHMLKR IVVYVFELGE YDLSYDIRDR TRFLKKLLSC KLASHEPAED SVASQENIAA HVVEHVFGRK LKSVSPITLH NRFYLPGSLS QIVLHAAPGY
0701: EPLPKPCSFV YEEQDQLSDL DKQREAAADL DGSEESSETG DENGSSDYDS ESSNGSDFSS EGDERTVSND ANDPAAPLIQ ISETSVSADQ EELRSRRALD
0801: LWLDDQPSTS NQTPSALNSN QSSYAKISIG DVGSRVKPKS YSLVDPGNGS GLKVDYAFLS EVSNVSPLHV CVEVLFENSS AEPILEVNLE DEESMKVADS
0901: SEQTLVGKAN ASYNNIPTLI PMEEISCLEP HQSTKRLIQV RFHHHLLPMR LTLHYNEKKV PVKLRPDLGY LVKPFSMSIE EFLATESRLP GMFEYSRRCT
1001: FDDHVKDSRT ENGKDKFLSI CESITLKVLS NSNLHLVSVD LPVANSLEDA TGLRLRFSSK ILSSEIPLLI TITVEGKCTE VLNLTVKINC EETVFGLNLL
1101: NRIANFMVEP SSSAT

Arabidopsis Description

PAT2AP-3 complex subunit beta [Source:UniProtKB/TrEMBL;Acc:F4IWW1]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.