Factsheet for Zm00001d030865_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	extracellular
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011676_P001
Zm00001d036168_P001
Zm00001d043726_P001
Zm00001d052338_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23460.1	Zm00001d011676_P001	AT1G60780.1	23543752
AT4G23460.1	Zm00001d036168_P001	AT1G60780.1	23543752
AT4G23460.1	Zm00001d043726_P001	AT1G60780.1	23543752
AT4G23460.1	Zm00001d052338_P001	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032260_P001	Maize	plastid	81.94	37.34
Zm00001d018154_P001	Maize	extracellular	70.83	14.33
KRH29071	Soybean	cytosol, endoplasmic reticulum	81.94	7.15
Zm00001d029196_P002	Maize	cytosol	83.33	7.03
Bra019302.1-P	Field mustard	cytosol	83.33	6.82
KRH77672	Soybean	endoplasmic reticulum	83.33	6.73
AT4G23460.1	Thale cress	cytosol	83.33	6.72
PGSC0003DMT400031784	Potato	cytosol	83.33	6.72
Solyc08g081320.2.1	Tomato	cytosol, extracellular, nucleus, plastid	83.33	6.7
KRH27813	Soybean	endoplasmic reticulum, nucleus	83.33	6.68
Zm00001d047464_P024	Maize	cytosol, mitochondrion, plastid	83.33	6.68
Bra035228.1-P	Field mustard	cytosol	83.33	6.67
GSMUA_AchrUn_...	Banana	cytosol	83.33	6.65
GSMUA_Achr1P24200_001	Banana	cytosol	83.33	6.65
AT4G11380.2	Thale cress	cytosol	83.33	6.55
VIT_02s0025g00100.t01	Wine grape	cytosol	83.33	6.52
KRH24097	Soybean	endoplasmic reticulum	80.56	6.46
Zm00001d044164_P002	Maize	plastid	33.33	2.81
Zm00001d011411_P002	Maize	plastid	33.33	2.78
Zm00001d035093_P002	Maize	plastid	31.94	2.01

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	UniProt:A0A1D6KEQ6	InterPro:AP_beta	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Clathrin/coatomer_adapt-like_N	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	InterPro:IPR011989	ProteinID:ONM01628.1	PFAM:PF01602	PANTHER:PTHR11134
PANTHER:PTHR11134:SF3	SUPFAM:SSF48371	UniParc:UPI0008428479	EnsemblPlantsGene:Zm00001d030865	EnsemblPlants:Zm00001d030865_P001	EnsemblPlants:Zm00001d030865_T001

Description

Beta-adaptin-like protein C

Coordinates

chr1:-:164103708..164104312

Molecular Weight (calculated)

8246.9 Da

IEP (calculated)

4.143

GRAVY (calculated)

0.006

Length

72 amino acids

Sequence
(BLAST)

1: MGHLLLQGLQ SSWNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NG

Best Arabidopsis Sequence Match ( AT4G11380.1 )
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSSSPIFEI
201: NSTTLTKLLT ALNECTEWGQ VFILDALSKY KAADPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIS DDSNQLDPSL LDELLTNIST LSSVYHKPPE AFVTRLKTTV QKTEDEDFAE
601: GSEAGYSSSN PVDSAASPPG NIPQPSGRQP APAVPAPVPD LLGDLMGLDN AAIVPVDDPI TQSGPPLPVV VPASSGQGLQ ISAQLSRKDG QVFYSMLFEN
701: NSQSVLDGFM IQFNKNTFGL AAAGSLQIPP LHPATSARTM LPMVLFQNMS AGPPSSLLQV AVKNNQQPVW YFTDKIILHA LFGEDGRMER GTFLETWRSL
801: PDSNEVLKEF PGITITSVES TIELLTAFNM FFIAKRKNGN QDVIYLSAKD PRDVPFLIEL TAMVGQPGLK CAVKTPTPEI APLFFEALEL LFKA

Arabidopsis Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:F4JNZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.