Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019302.1-P | Field mustard | cytosol | 91.94 | 93.3 |
| CDX94190 | Canola | cytosol | 92.27 | 91.56 |
| AT4G11380.2 | Thale cress | cytosol | 92.16 | 89.85 |
| KRH77672 | Soybean | endoplasmic reticulum | 86.34 | 86.53 |
| Solyc08g081320.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 86.34 | 86.05 |
| PGSC0003DMT400031784 | Potato | cytosol | 86.0 | 86.0 |
| KRH29071 | Soybean | cytosol, endoplasmic reticulum | 79.06 | 85.58 |
| KRH27813 | Soybean | endoplasmic reticulum, nucleus | 86.0 | 85.52 |
| KRH24097 | Soybean | endoplasmic reticulum | 85.78 | 85.3 |
| Os03t0355600-01 | Rice | plasma membrane | 84.32 | 84.32 |
| HORVU4Hr1G045980.10 | Barley | cytosol | 84.55 | 83.98 |
| TraesCS4B01G165000.1 | Wheat | cytosol, golgi | 84.43 | 83.96 |
| TraesCS4D01G166700.1 | Wheat | cytosol | 84.32 | 83.85 |
| GSMUA_AchrUn_... | Banana | cytosol | 84.66 | 83.81 |
| GSMUA_Achr1P24200_001 | Banana | cytosol | 84.55 | 83.7 |
| EER94839 | Sorghum | cytosol | 83.99 | 83.61 |
| TraesCS4A01G166200.2 | Wheat | cytosol | 84.1 | 83.35 |
| Zm00001d030865_P001 | Maize | cytosol | 6.72 | 83.33 |
| Zm00001d047464_P024 | Maize | cytosol, mitochondrion, plastid | 83.76 | 83.3 |
| VIT_02s0025g00100.t01 | Wine grape | cytosol | 85.67 | 83.15 |
| Zm00001d029196_P002 | Maize | cytosol | 79.17 | 82.88 |
| Zm00001d032260_P001 | Maize | plastid | 12.09 | 68.35 |
| Zm00001d018154_P001 | Maize | extracellular | 14.33 | 35.96 |
| AT5G11490.2 | Thale cress | cytosol, plastid | 26.09 | 27.41 |
| AT3G55480.2 | Thale cress | cytosol, plasma membrane, plastid | 22.96 | 18.39 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:2.60.40.1150 | MapMan:22.1.2.2 | MapMan:22.1.3.2 | Gene3D:3.30.310.10 | EntrezGene:828445 |
| UniProt:A0A178UZW6 | ProteinID:AEE84761.1 | EMBL:AF216387 | InterPro:AP_beta | InterPro:AP_complex_bsu_1_2_4 | InterPro:ARM-like |
| InterPro:ARM-type_fold | ArrayExpress:AT4G23460 | EnsemblPlantsGene:AT4G23460 | RefSeq:AT4G23460 | TAIR:AT4G23460 | RefSeq:AT4G23460-TAIR-G |
| EnsemblPlants:AT4G23460.1 | TAIR:AT4G23460.1 | EMBL:AY065000 | Unigene:At.2441 | InterPro:B-adaptin_app_sub_C | ProteinID:CAA20467.1 |
| ProteinID:CAB79301.1 | InterPro:Clathrin/coatomer_adapt-like_N | InterPro:Clathrin_a/b/g-adaptin_app_Ig | InterPro:Clathrin_app_Ig-like_sf | InterPro:Clathrin_b-adaptin_app_Ig-like | InterPro:Coatomer/calthrin_app_sub_C |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0008565 | GO:GO:0009506 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 |
| GO:GO:0030117 | GO:GO:0030131 | GO:GO:0030276 | GO:GO:0030665 | GO:GO:0031410 | InterPro:IPR011989 |
| InterPro:IPR012295 | InterPro:IPR013037 | RefSeq:NP_194077.1 | UniProt:O81742 | ProteinID:OAO98927.1 | PFAM:PF01602 |
| PFAM:PF02883 | PFAM:PF09066 | PIRSF:PIRSF002291 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR11134 | PANTHER:PTHR11134:SF3 |
| SMART:SM00809 | SMART:SM01020 | SUPFAM:SSF48371 | SUPFAM:SSF49348 | SUPFAM:SSF55711 | InterPro:TBP_dom_sf |
| UniParc:UPI0000162B06 | SEG:seg | : | : | : | : |
Description
BETAC-ADBeta-adaptin-like protein C [Source:UniProtKB/Swiss-Prot;Acc:O81742]
Coordinates
chr4:-:12243671..12249018
Molecular Weight (calculated)
99102.8 Da
IEP (calculated)
4.639
GRAVY (calculated)
-0.059
Length
893 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSTSPIFEI
201: NSTILTKLLT ALNECTEWGQ VFILDALSRY KASDPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLDPSL LDELLANIST LSSVYHKPPE AFVTRLKTTV QKTEDEDYVE
601: GSETGYPEAS GNPVDGAASP SATTGYVTKL AAAPAPVPDL LGDLMGSDNA AIVPVDEPTT PSGRPLPVVL PASKGQGLQI SAQLTRQDGQ VFYSMLLENN
701: SQSLLDGFMI QFNKNSFGLA AVGSLQVPPL QPGASARTMM PMVLSQNMST GSTSSVLQVA VKNNQQPVWY FEDKIVLNAL FSEDGRMERG TFLETWKSLP
801: DSNEVQKEFP GITITSVEST LDLLAASNMF FIAKRKNGNQ DVLYLSAKVP RGIPFLIELT AIVGQPGLKC AVKTPTPEIA PLFFEAVEIL FKA
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSTSPIFEI
201: NSTILTKLLT ALNECTEWGQ VFILDALSRY KASDPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLDPSL LDELLANIST LSSVYHKPPE AFVTRLKTTV QKTEDEDYVE
601: GSETGYPEAS GNPVDGAASP SATTGYVTKL AAAPAPVPDL LGDLMGSDNA AIVPVDEPTT PSGRPLPVVL PASKGQGLQI SAQLTRQDGQ VFYSMLLENN
701: SQSLLDGFMI QFNKNSFGLA AVGSLQVPPL QPGASARTMM PMVLSQNMST GSTSSVLQVA VKNNQQPVWY FEDKIVLNAL FSEDGRMERG TFLETWKSLP
801: DSNEVQKEFP GITITSVEST LDLLAASNMF FIAKRKNGNQ DVLYLSAKVP RGIPFLIELT AIVGQPGLKC AVKTPTPEIA PLFFEAVEIL FKA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.