Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G165000.1 | Wheat | cytosol, golgi | 98.45 | 98.78 |
| TraesCS4D01G166700.1 | Wheat | cytosol | 98.11 | 98.44 |
| HORVU4Hr1G045980.10 | Barley | cytosol | 97.89 | 98.11 |
| Os03t0355600-01 | Rice | plasma membrane | 92.34 | 93.17 |
| EER94839 | Sorghum | cytosol | 92.67 | 93.09 |
| Zm00001d047464_P024 | Maize | cytosol, mitochondrion, plastid | 92.67 | 92.98 |
| Zm00001d029196_P002 | Maize | cytosol | 87.68 | 92.61 |
| GSMUA_Achr1P24200_001 | Banana | cytosol | 86.24 | 86.14 |
| GSMUA_AchrUn_... | Banana | cytosol | 85.9 | 85.81 |
| KRH77672 | Soybean | endoplasmic reticulum | 84.24 | 85.19 |
| PGSC0003DMT400031784 | Potato | cytosol | 84.02 | 84.77 |
| Bra019302.1-P | Field mustard | cytosol | 82.57 | 84.55 |
| Solyc08g081320.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 83.68 | 84.15 |
| AT4G23460.1 | Thale cress | cytosol | 83.35 | 84.1 |
| KRH27813 | Soybean | endoplasmic reticulum, nucleus | 83.57 | 83.85 |
| Bra035228.1-P | Field mustard | cytosol | 83.13 | 83.31 |
| KRH29071 | Soybean | cytosol, endoplasmic reticulum | 76.14 | 83.15 |
| KRH24097 | Soybean | endoplasmic reticulum | 82.46 | 82.74 |
| AT4G11380.2 | Thale cress | cytosol | 83.24 | 81.88 |
| VIT_02s0025g00100.t01 | Wine grape | cytosol | 83.46 | 81.74 |
| CDY71479 | Canola | cytosol | 35.18 | 73.55 |
| TraesCS3A01G228800.1 | Wheat | plastid | 26.42 | 28.3 |
| TraesCS3A01G530000.1 | Wheat | cytosol | 23.53 | 19.52 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:2.60.40.1150 | MapMan:22.1.2.2 | MapMan:22.1.3.2 | Gene3D:3.30.310.10 | InterPro:AP_beta |
| InterPro:AP_complex_bsu_1_2_4 | InterPro:ARM-like | InterPro:ARM-type_fold | InterPro:B-adaptin_app_sub_C | InterPro:Clathrin/coatomer_adapt-like_N | InterPro:Clathrin_a/b/g-adaptin_app_Ig |
| InterPro:Clathrin_app_Ig-like_sf | InterPro:Clathrin_b-adaptin_app_Ig-like | InterPro:Coatomer/calthrin_app_sub_C | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030117 | GO:GO:0030131 |
| GO:GO:0030276 | InterPro:IPR011989 | InterPro:IPR012295 | InterPro:IPR013037 | PFAM:PF01602 | PFAM:PF09066 |
| PIRSF:PIRSF002291 | PANTHER:PTHR11134 | PANTHER:PTHR11134:SF3 | SMART:SM00809 | SMART:SM01020 | SUPFAM:SSF48371 |
| SUPFAM:SSF49348 | SUPFAM:SSF55711 | InterPro:TBP_dom_sf | EnsemblPlantsGene:TraesCS4A01G166200 | EnsemblPlants:TraesCS4A01G166200.2 | SEG:seg |
Description
No Description!
Coordinates
chr4A:-:400754845..400760929
Molecular Weight (calculated)
99544.0 Da
IEP (calculated)
4.729
GRAVY (calculated)
-0.022
Length
901 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQR CLKDDDPYVR KTAAICVAKL YDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ DSSARPIFEI
201: TSHTLTKLLT ALNECTEWGQ VFILDSLSRY KATDARDAEN IVERVTPRLQ HANCAVVLSA VKIILLQMVL ITSTDVVRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL DTFPEEPALV QLQLLTATVK LFLKKPTEGP
501: QQMIQAVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIS DDSNQLDSSL LDELLANIST LSSVYHKPPE AFVSRVKAAP RVDDEEFADA
601: GETGYSESPS QGLDGASPSS STGNSSNVPV KQPAAAAPAV AAPIPDLLGD LMGLDNALVL VDEPTASSGP PLPVVLPSTT GQGLQISAQL VRRDGQIYYD
701: ISFENGTQGV LDGFMIQFNK NTFGLAAGGP LQVPPLQPGS SARTLLAMVF SQNVSPGAPN LLLQVAVKNN QQPVWYFSDK GSLHVFFGED GKMERTGFLE
801: AWKSLPDDNE FSKEYPNSVI SSIDATVEHL AASNVFFIAK RKNANMDVLY LSAKIPRGIP FLIELTAAVG VPGAKCAVKT PNREFVPLFF EAMESLIKIF
901: L
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQR CLKDDDPYVR KTAAICVAKL YDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ DSSARPIFEI
201: TSHTLTKLLT ALNECTEWGQ VFILDSLSRY KATDARDAEN IVERVTPRLQ HANCAVVLSA VKIILLQMVL ITSTDVVRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL DTFPEEPALV QLQLLTATVK LFLKKPTEGP
501: QQMIQAVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIS DDSNQLDSSL LDELLANIST LSSVYHKPPE AFVSRVKAAP RVDDEEFADA
601: GETGYSESPS QGLDGASPSS STGNSSNVPV KQPAAAAPAV AAPIPDLLGD LMGLDNALVL VDEPTASSGP PLPVVLPSTT GQGLQISAQL VRRDGQIYYD
701: ISFENGTQGV LDGFMIQFNK NTFGLAAGGP LQVPPLQPGS SARTLLAMVF SQNVSPGAPN LLLQVAVKNN QQPVWYFSDK GSLHVFFGED GKMERTGFLE
801: AWKSLPDDNE FSKEYPNSVI SSIDATVEHL AASNVFFIAK RKNANMDVLY LSAKIPRGIP FLIELTAAVG VPGAKCAVKT PNREFVPLFF EAMESLIKIF
901: L
001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSTSPIFEI
201: NSTILTKLLT ALNECTEWGQ VFILDALSRY KASDPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLDPSL LDELLANIST LSSVYHKPPE AFVTRLKTTV QKTEDEDYVE
601: GSETGYPEAS GNPVDGAASP SATTGYVTKL AAAPAPVPDL LGDLMGSDNA AIVPVDEPTT PSGRPLPVVL PASKGQGLQI SAQLTRQDGQ VFYSMLLENN
701: SQSLLDGFMI QFNKNSFGLA AVGSLQVPPL QPGASARTMM PMVLSQNMST GSTSSVLQVA VKNNQQPVWY FEDKIVLNAL FSEDGRMERG TFLETWKSLP
801: DSNEVQKEFP GITITSVEST LDLLAASNMF FIAKRKNGNQ DVLYLSAKVP RGIPFLIELT AIVGQPGLKC AVKTPTPEIA PLFFEAVEIL FKA
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSTSPIFEI
201: NSTILTKLLT ALNECTEWGQ VFILDALSRY KASDPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLDPSL LDELLANIST LSSVYHKPPE AFVTRLKTTV QKTEDEDYVE
601: GSETGYPEAS GNPVDGAASP SATTGYVTKL AAAPAPVPDL LGDLMGSDNA AIVPVDEPTT PSGRPLPVVL PASKGQGLQI SAQLTRQDGQ VFYSMLLENN
701: SQSLLDGFMI QFNKNSFGLA AVGSLQVPPL QPGASARTMM PMVLSQNMST GSTSSVLQVA VKNNQQPVWY FEDKIVLNAL FSEDGRMERG TFLETWKSLP
801: DSNEVQKEFP GITITSVEST LDLLAASNMF FIAKRKNGNQ DVLYLSAKVP RGIPFLIELT AIVGQPGLKC AVKTPTPEIA PLFFEAVEIL FKA
Arabidopsis Description
BETAC-ADBeta-adaptin-like protein C [Source:UniProtKB/Swiss-Prot;Acc:O81742]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.