Factsheet for Bra035228.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G11380.2	Thale cress	cytosol	94.1	92.36
Bra019302.1-P	Field mustard	cytosol	88.88	90.8
Solyc08g081320.2.1	Tomato	cytosol, extracellular, nucleus, plastid	86.87	87.17
KRH77672	Soybean	endoplasmic reticulum	85.54	86.31
KRH29071	Soybean	cytosol, endoplasmic reticulum	79.2	86.3
PGSC0003DMT400031784	Potato	cytosol	85.54	86.11
KRH24097	Soybean	endoplasmic reticulum	85.54	85.63
KRH27813	Soybean	endoplasmic reticulum, nucleus	84.98	85.08
Os03t0355600-01	Rice	plasma membrane	83.87	84.43
TraesCS4B01G165000.1	Wheat	cytosol, golgi	83.65	83.74
GSMUA_Achr1P24200_001	Banana	cytosol	83.98	83.7
HORVU4Hr1G045980.10	Barley	cytosol	83.54	83.54
GSMUA_AchrUn_...	Banana	cytosol	83.76	83.48
TraesCS4D01G166700.1	Wheat	cytosol	83.31	83.41
Zm00001d030865_P001	Maize	cytosol	6.67	83.33
EER94839	Sorghum	cytosol	83.09	83.28
VIT_02s0025g00100.t01	Wine grape	cytosol	85.09	83.15
TraesCS4A01G166200.2	Wheat	cytosol	83.31	83.13
Zm00001d047464_P024	Maize	cytosol, mitochondrion, plastid	82.98	83.07
Zm00001d029196_P002	Maize	cytosol	78.42	82.65
CDX86788	Canola	cytosol	99.56	77.49
Zm00001d032260_P001	Maize	plastid	11.9	67.72
Zm00001d018154_P001	Maize	extracellular	14.02	35.39
Bra006100.1-P	Field mustard	plastid	26.03	27.86
Bra007167.1-P	Field mustard	cytosol	22.02	19.8

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1150	MapMan:22.1.2.2	MapMan:22.1.3.2	Gene3D:3.30.310.10	InterPro:AP_beta
InterPro:AP_complex_bsu_1_2_4	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C	EnsemblPlantsGene:Bra035228	EnsemblPlants:Bra035228.1
EnsemblPlants:Bra035228.1-P	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:Clathrin_b-adaptin_app_Ig-like	InterPro:Coatomer/calthrin_app_sub_C
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030131
GO:GO:0030276	InterPro:IPR011989	InterPro:IPR012295	InterPro:IPR013037	UniProt:M4F2D0	PFAM:PF01602
PFAM:PF02883	PFAM:PF09066	PIRSF:PIRSF002291	PANTHER:PTHR11134	PANTHER:PTHR11134:SF3	SMART:SM00809
SMART:SM01020	SUPFAM:SSF48371	SUPFAM:SSF49348	SUPFAM:SSF55711	InterPro:TBP_dom_sf	UniParc:UPI0002546B0B
SEG:seg	:	:	:	:	:

Description

AT4G11380 (E=0.0) | beta-adaptin, putative

Coordinates

chrA08:-:9347720..9352339

Molecular Weight (calculated)

99659.4 Da

IEP (calculated)

4.655

GRAVY (calculated)

-0.041

Length

899 amino acids

Sequence
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL YDINAELVED RGFLDALKDL ISDNNPMVVA NAVAALAEIQ ENSTSAIFEI
201: NSTTLTKLLT ALNECTEWGQ VFILDALSRY KAADPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RRAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ESFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLEPSL LDELLTNIST LSSVYHKPPE AFVTRLKTTV QKTEDEDFAE
601: GSEAGYSSGN PADSAASPPV TMGNVAHPAG RQTAPAPAAP APVPDLLGDL MGLDNAAIVP VDEPTTPSGP PLPVVVPAST GQGLQISAQL ARRDGQVFYS
701: MLFENNTQAV LDGFMIQFNK NTFGLAAAGP LQIAPLQPGT SARTLLPMVL LQNLSTGPPS SLLQVAVKNN QQPVWYFNDK IILHALFSED GRMERGTFLE
801: TWRSLPDSNE VQREFPGITI TSVESTIDLL TAYNMFFIAK RKNGNQDVIY LSAKVPVDVP LLIELTAVVG QPGLKCALKT PTPEIAPIFF EAVELLFKA

Best Arabidopsis Sequence Match ( AT4G11380.1 )
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSSSPIFEI
201: NSTTLTKLLT ALNECTEWGQ VFILDALSKY KAADPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIS DDSNQLDPSL LDELLTNIST LSSVYHKPPE AFVTRLKTTV QKTEDEDFAE
601: GSEAGYSSSN PVDSAASPPG NIPQPSGRQP APAVPAPVPD LLGDLMGLDN AAIVPVDDPI TQSGPPLPVV VPASSGQGLQ ISAQLSRKDG QVFYSMLFEN
701: NSQSVLDGFM IQFNKNTFGL AAAGSLQIPP LHPATSARTM LPMVLFQNMS AGPPSSLLQV AVKNNQQPVW YFTDKIILHA LFGEDGRMER GTFLETWRSL
801: PDSNEVLKEF PGITITSVES TIELLTAFNM FFIAKRKNGN QDVIYLSAKD PRDVPFLIEL TAMVGQPGLK CAVKTPTPEI APLFFEALEL LFKA

Arabidopsis Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:F4JNZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.