Factsheet for Bra019302.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra031481.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23460.1	Bra031481.1-P	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94190	Canola	cytosol	97.16	95.0
AT4G23460.1	Thale cress	cytosol	93.3	91.94
Bra035228.1-P	Field mustard	cytosol	90.8	88.88
KRH77672	Soybean	endoplasmic reticulum	86.14	85.07
PGSC0003DMT400031784	Potato	cytosol	86.14	84.88
Solyc08g081320.2.1	Tomato	cytosol, extracellular, nucleus, plastid	86.25	84.71
KRH27813	Soybean	endoplasmic reticulum, nucleus	86.02	84.3
KRH29071	Soybean	cytosol, endoplasmic reticulum	78.86	84.12
KRH24097	Soybean	endoplasmic reticulum	85.57	83.85
Zm00001d030865_P001	Maize	cytosol	6.82	83.33
Os03t0355600-01	Rice	plasma membrane	84.32	83.09
TraesCS4B01G165000.1	Wheat	cytosol, golgi	84.77	83.07
HORVU4Hr1G045980.10	Barley	cytosol	84.77	82.98
TraesCS4D01G166700.1	Wheat	cytosol	84.55	82.85
EER94839	Sorghum	cytosol	84.32	82.72
TraesCS4A01G166200.2	Wheat	cytosol	84.55	82.57
Zm00001d047464_P024	Maize	cytosol, mitochondrion, plastid	84.09	82.41
Zm00001d029196_P002	Maize	cytosol	79.43	81.95
GSMUA_Achr1P24200_001	Banana	cytosol	83.86	81.82
GSMUA_AchrUn_...	Banana	cytosol	83.75	81.71
VIT_02s0025g00100.t01	Wine grape	cytosol	84.77	81.09
Zm00001d032260_P001	Maize	plastid	12.27	68.35
Zm00001d018154_P001	Maize	extracellular	14.43	35.67
Bra006100.1-P	Field mustard	plastid	26.48	27.74
Bra007167.1-P	Field mustard	cytosol	22.61	19.9

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1150	MapMan:22.1.2.2	MapMan:22.1.3.2	Gene3D:3.30.310.10	InterPro:AP_beta
InterPro:AP_complex_bsu_1_2_4	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C	EnsemblPlantsGene:Bra019302	EnsemblPlants:Bra019302.1
EnsemblPlants:Bra019302.1-P	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:Clathrin_b-adaptin_app_Ig-like	InterPro:Coatomer/calthrin_app_sub_C
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0008565	GO:GO:0009506	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117
GO:GO:0030131	GO:GO:0030276	InterPro:IPR011989	InterPro:IPR012295	InterPro:IPR013037	UniProt:M4DS09
PFAM:PF01602	PFAM:PF02883	PFAM:PF09066	PIRSF:PIRSF002291	PANTHER:PTHR11134	PANTHER:PTHR11134:SF3
SMART:SM00809	SMART:SM01020	SUPFAM:SSF48371	SUPFAM:SSF49348	SUPFAM:SSF55711	InterPro:TBP_dom_sf
UniParc:UPI0002540EED	SEG:seg	:	:	:	:

Description

AT4G23460 (E=0.0) | beta-adaptin, putative

Coordinates

chrA03:-:25078080..25082499

Molecular Weight (calculated)

97785.3 Da

IEP (calculated)

4.618

GRAVY (calculated)

-0.063

Length

880 amino acids

Sequence
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVLNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAVCVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ DKSASPIFEI
201: NSVTLTKLLT ALNECTEWGQ VFILDSLSRY KAADPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLEPSL LDELLANIST LSSVYHKPPE AFVTRLKPTV QKTEDEDYVE
601: GGETEISGNP VDGAAPVAAA PAPVPDLLGD LMGTDDAAIV PVDDYTTLSG PPLHVVLPAS SGQGLQISAQ LTRQDGQVFY SMLLENSSQS VLDGFMIQFN
701: KNSFGLAAAG PLQVQPLQPG ESARTMLPMV LSQNMSDGPT NSLLQVAVKN NQPPVKYFTD KIVLHALFSE DGRMERGTFL ETWRSLPDSN EVQKDFPGIT
801: ITSIDSTLDL LAASNMFFIA KRKNGNQDVL YLSAKAPKGV PFLIELTAMV GQPGLKCAVK TPTPEIAPLF FESLEMLFKS

Best Arabidopsis Sequence Match ( AT4G23460.1 )
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSTSPIFEI
201: NSTILTKLLT ALNECTEWGQ VFILDALSRY KASDPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLDPSL LDELLANIST LSSVYHKPPE AFVTRLKTTV QKTEDEDYVE
601: GSETGYPEAS GNPVDGAASP SATTGYVTKL AAAPAPVPDL LGDLMGSDNA AIVPVDEPTT PSGRPLPVVL PASKGQGLQI SAQLTRQDGQ VFYSMLLENN
701: SQSLLDGFMI QFNKNSFGLA AVGSLQVPPL QPGASARTMM PMVLSQNMST GSTSSVLQVA VKNNQQPVWY FEDKIVLNAL FSEDGRMERG TFLETWKSLP
801: DSNEVQKEFP GITITSVEST LDLLAASNMF FIAKRKNGNQ DVLYLSAKVP RGIPFLIELT AIVGQPGLKC AVKTPTPEIA PLFFEAVEIL FKA

Arabidopsis Description

BETAC-ADBeta-adaptin-like protein C [Source:UniProtKB/Swiss-Prot;Acc:O81742]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.